Package: tomoseqr
Title: R Package for Analyzing Tomo-seq Data
Version: 1.15.0
Authors@R: 
    person(
        given = "Ryosuke",
        family = "Matsuzawa",
        role = c("aut", "cre"),
        email = "kinakomochi.work@gmail.com",
        comment = c(ORCID = "0000-0003-2999-4734")
    )
Description: `tomoseqr` is an R package for analyzing Tomo-seq data.
        Tomo-seq is a genome-wide RNA tomography method that combines
        combining high-throughput RNA sequencing with cryosectioning
        for spatially resolved transcriptomics. `tomoseqr` reconstructs
        3D expression patterns from tomo-seq data and visualizes the
        reconstructed 3D expression patterns.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
VignetteBuilder: knitr
Depends: R (>= 4.2)
biocViews: GeneExpression, Sequencing, RNASeq, Transcriptomics,
        Spatial, Visualization, Software
Imports: grDevices, graphics, animation, tibble, dplyr, stringr, purrr,
        methods, shiny, BiocFileCache, readr, tools, plotly, ggplot2
Suggests: rmarkdown, knitr, BiocStyle, testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/pak/sysreqs: make libmagick++-dev gsfonts texlive libicu-dev
        libssl-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:16:02 UTC
RemoteUrl: https://github.com/bioc/tomoseqr
RemoteRef: HEAD
RemoteSha: 5f3f9ac1274c060340ffa2e7ef55d69afd64e179
NeedsCompilation: no
Packaged: 2026-01-22 18:53:56 UTC; root
Author: Ryosuke Matsuzawa [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2999-4734>)
Maintainer: Ryosuke Matsuzawa <kinakomochi.work@gmail.com>
Built: R 4.6.0; ; 2026-01-22 19:04:13 UTC; unix
