scrapper-package	scrapper-package
adt_quality_control	adt_quality_control
aggregateAcrossCells	aggregateAcrossCells
aggregateAcrossCells.se	aggregateAcrossCells.se
aggregateAcrossGenes	aggregateAcrossGenes
aggregateAcrossGenes.se	aggregateAcrossGenes.se
aggregateColData	aggregateAcrossCells.se
analyze	analyze
analyze.se	analyze.se
buildSnnGraph	buildSnnGraph
centerSizeFactors	centerSizeFactors
chooseHighlyVariableGenes	chooseHighlyVariableGenes
choosePseudoCount	choosePseudoCount
chooseRnaHvgs.se	chooseRnaHvgs.se
clusterGraph	clusterGraph
clusterGraph.se	clusterGraph.se
clusterKmeans	clusterKmeans
clusterKmeans.se	clusterKmeans.se
combineFactors	combineFactors
computeAdtQcMetrics	adt_quality_control
computeBlockWeights	computeBlockWeights
computeClrm1Factors	computeClrm1Factors
computeCrisprQcMetrics	crispr_quality_control
computeRnaQcMetrics	rna_quality_control
computeRnaQcMetricsWithAltExps	quickRnaQc.se
convertAnalyzeResults	convertAnalyzeResults
correctMnn	correctMnn
correctMnn.se	correctMnn.se
countGroupsByBlock	countGroupsByBlock
crispr_quality_control	crispr_quality_control
DelayedArray,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
dim,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
dimnames,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
extract_array,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
extract_sparse_array,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
filterAdtQcMetrics	adt_quality_control
filterCrisprQcMetrics	crispr_quality_control
filterRnaQcMetrics	rna_quality_control
fitVarianceTrend	fitVarianceTrend
formatComputeAdtQcMetricsResult	quickAdtQc.se
formatComputeCrisprQcMetricsResult	quickCrisprQc.se
formatComputeRnaQcMetricsResult	quickRnaQc.se
formatModelGeneVariancesResult	chooseRnaHvgs.se
formatScoreMarkersResult	scoreMarkers.se
getTestAdtData.se	getTestData.se
getTestCrisprData.se	getTestData.se
getTestData.se	getTestData.se
getTestRnaData.se	getTestData.se
initializeCpp,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
is_sparse,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
LogNormalizedMatrix	LogNormalizedMatrix
LogNormalizedMatrix-class	LogNormalizedMatrix
LogNormalizedMatrixSeed	LogNormalizedMatrix
LogNormalizedMatrixSeed-class	LogNormalizedMatrix
matrixClass,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
modelGeneVariances	modelGeneVariances
normalizeAdtCounts.se	normalizeAdtCounts.se
normalizeCounts	normalizeCounts
normalizeCrisprCounts.se	normalizeCrisprCounts.se
normalizeRnaCounts.se	normalizeRnaCounts.se
previewMarkers	scoreMarkers.se
quickAdtQc.se	quickAdtQc.se
quickCrisprQc.se	quickCrisprQc.se
quickRnaQc.se	quickRnaQc.se
reportGroupMarkerStatistics	reportGroupMarkerStatistics
rna_quality_control	rna_quality_control
runAllNeighborSteps	runAllNeighborSteps
runAllNeighborSteps.se	runAllNeighborSteps.se
runPca	runPca
runPca.se	runPca.se
runTsne	runTsne
runTsne.se	runTsne.se
runUmap	runUmap
runUmap.se	runUmap.se
sanitizeSizeFactors	sanitizeSizeFactors
scaleByNeighbors	scaleByNeighbors
scaleByNeighbors.se	scaleByNeighbors.se
scoreGeneSet	scoreGeneSet
scoreGeneSet.se	scoreGeneSet.se
scoreMarkers	scoreMarkers
scoreMarkers.se	scoreMarkers.se
scrapper	scrapper-package
subsampleByNeighbors	subsampleByNeighbors
suggestAdtQcThresholds	adt_quality_control
suggestCrisprQcThresholds	crispr_quality_control
suggestRnaQcThresholds	rna_quality_control
summarizeEffects	summarizeEffects
testEnrichment	testEnrichment
tsnePerplexityToNeighbors	runTsne
type,LogNormalizedMatrixSeed-method	LogNormalizedMatrix
