Package: scone
Version: 1.35.0
Title: Single Cell Overview of Normalized Expression data
Description: SCONE is an R package for comparing and ranking the
        performance of different normalization schemes for single-cell
        RNA-seq and other high-throughput analyses.
Authors@R: c(person("Michael", "Cole", email = "mbeloc@gmail.com",
	          role = c("aut", "cph")),
	     person("Davide", "Risso", email = "risso.davide@gmail.com",
	          role = c("aut", "cre", "cph")),
	     person("Matteo", "Borella", 
           email = "matteobor94@gmail.com", 
           role = "ctb"),
           person("Chiara", "Romualdi", role = c("ctb"),
             email = "chiara.romualdi@gmail.com"))
License: Artistic-2.0
Depends: R (>= 3.4), methods, SummarizedExperiment
Imports: graphics, stats, utils, aroma.light, BiocParallel, class,
        cluster, compositions, diptest, edgeR, fpc, gplots, grDevices,
        hexbin, limma, matrixStats, mixtools, RColorBrewer, boot,
        rhdf5, RUVSeq, rARPACK, MatrixGenerics, SingleCellExperiment,
        DelayedMatrixStats, sparseMatrixStats, SparseArray (>= 1.7.6)
Suggests: BiocStyle, DT, ggplot2, knitr, miniUI, NMF, plotly, reshape2,
        rmarkdown, scran, scRNAseq, shiny, testthat, DelayedArray,
        visNetwork, doParallel, batchtools, splatter, scater,
        kableExtra, mclust, TENxPBMCData
VignetteBuilder: knitr
biocViews: ImmunoOncology, Normalization, Preprocessing,
        QualityControl, GeneExpression, RNASeq, Software,
        Transcriptomics, Sequencing, SingleCell, Coverage
BugReports: https://github.com/YosefLab/scone/issues
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:36:05 UTC
RemoteUrl: https://github.com/bioc/scone
RemoteRef: HEAD
RemoteSha: 60f7f3706dbbb3f5cf5899cedac89fe0b0e4c85f
NeedsCompilation: no
Packaged: 2026-01-22 20:07:47 UTC; root
Author: Michael Cole [aut, cph],
  Davide Risso [aut, cre, cph],
  Matteo Borella [ctb],
  Chiara Romualdi [ctb]
Maintainer: Davide Risso <risso.davide@gmail.com>
Built: R 4.6.0; ; 2026-01-22 20:34:19 UTC; unix
