miaViz-package	miaViz-package
colTreeData	treeData
colTreeData,TreeSummarizedExperiment-method	treeData
colTreeData<-	treeData
colTreeData<-,TreeSummarizedExperiment-method	treeData
col_graph	mia-datasets
combineTreeData	treeData
combineTreeData,phylo-method	treeData
combineTreeData,treedata-method	treeData
deprecate	deprecate
getNeatOrder	getNeatOrder
getNeatOrder,matrix-method	getNeatOrder
mia-datasets	mia-datasets
mia-plot-args	mia-plot-args
miaViz	miaViz-package
plotAbundance	plotAbundance
plotAbundance,SummarizedExperiment-method	plotAbundance
plotAbundanceDensity	plotAbundanceDensity
plotAbundanceDensity,SummarizedExperiment-method	plotAbundanceDensity
plotBarplot	plotHistogram
plotBarplot,SummarizedExperiment-method	plotHistogram
plotBoxplot	plotBoxplot
plotBoxplot,SummarizedExperiment-method	plotBoxplot
plotCCA	plotCCA
plotCCA,matrix-method	plotCCA
plotCCA,SingleCellExperiment-method	plotCCA
plotColGraph	plotGraph
plotColGraph,ANY,SummarizedExperiment-method	plotGraph
plotColGraph,SummarizedExperiment,missing-method	plotGraph
plotColTile	plotColTile
plotColTile,SummarizedExperiment-method	plotColTile
plotColTree	plotTree
plotColTree,TreeSummarizedExperiment-method	plotTree
plotDMN	plotDMN
plotDMNFit	plotDMN
plotDMNFit,SummarizedExperiment-method	plotDMN
plotFeaturePrevalence	deprecate
plotFeaturePrevalence,ANY-method	deprecate
plotForest	plotForest
plotForest,data.frame-method	plotForest
plotForest,SummarizedExperiment-method	plotForest
plotForest,TreeSummarizedExperiment-method	plotForest
plotGraph	plotGraph
plotHistogram	plotHistogram
plotHistogram,SummarizedExperiment-method	plotHistogram
plotLoadings	plotLoadings
plotLoadings,matrix-method	plotLoadings
plotLoadings,SingleCellExperiment-method	plotLoadings
plotLoadings,TreeSummarizedExperiment-method	plotLoadings
plotMediation	plotMediation
plotMediation,data.frame-method	plotMediation
plotMediation,SummarizedExperiment-method	plotMediation
plotNMDS	plotNMDS
plotPrevalence	plotPrevalence
plotPrevalence,SummarizedExperiment-method	plotPrevalence
plotPrevalentAbundance	plotPrevalence
plotPrevalentAbundance,SummarizedExperiment-method	plotPrevalence
plotRDA	plotCCA
plotRDA,matrix-method	plotCCA
plotRDA,SingleCellExperiment-method	plotCCA
plotRowGraph	plotGraph
plotRowGraph,ANY,SummarizedExperiment-method	plotGraph
plotRowGraph,SummarizedExperiment,missing-method	plotGraph
plotRowPrevalence	plotPrevalence
plotRowPrevalence,SummarizedExperiment-method	plotPrevalence
plotRowTile	plotColTile
plotRowTile,SummarizedExperiment-method	plotColTile
plotRowTree	plotTree
plotRowTree,TreeSummarizedExperiment-method	plotTree
plotScree	plotScree
plotScree,ANY-method	plotScree
plotScree,SingleCellExperiment-method	plotScree
plotSeries	plotSeries
plotSeries,SummarizedExperiment-method	plotSeries
plotTaxaPrevalence	deprecate
plotTaxaPrevalence,ANY-method	deprecate
plotTree	plotTree
rowTreeData	treeData
rowTreeData,TreeSummarizedExperiment-method	treeData
rowTreeData<-	treeData
rowTreeData<-,TreeSummarizedExperiment-method	treeData
row_graph	mia-datasets
row_graph_order	mia-datasets
treeData	treeData
