Type: Package
Package: maftools
Title: Summarize, Analyze and Visualize MAF Files
Version: 2.27.0
Date: 2021-04-30
Authors@R: 
    person(given = "Anand",
           family = "Mayakonda",
           role = c("aut", "cre"),
           email = "anand_mt@hotmail.com",
           comment = c(ORCID = "0000-0003-1162-687X"))
Maintainer: Anand Mayakonda <anand_mt@hotmail.com>
Description: Analyze and visualize Mutation Annotation Format (MAF)
        files from large scale sequencing studies. This package
        provides various functions to perform most commonly used
        analyses in cancer genomics and to create feature rich
        customizable visualzations with minimal effort.
License: MIT + file LICENSE
URL: https://github.com/PoisonAlien/maftools
BugReports: https://github.com/PoisonAlien/maftools/issues
Depends: R (>= 4.1.0)
Imports: data.table, grDevices, methods, RColorBrewer, Rhtslib,
        survival, DNAcopy, pheatmap
Suggests: berryFunctions, Biostrings, BSgenome,
        BSgenome.Hsapiens.UCSC.hg19, GenomicRanges, IRanges, knitr,
        mclust, MultiAssayExperiment, NMF, R.utils, RaggedExperiment,
        rmarkdown, S4Vectors
LinkingTo: Rhtslib
VignetteBuilder: knitr
biocViews: DataRepresentation, DNASeq, Visualization, DriverMutation,
        VariantAnnotation, FeatureExtraction, Classification,
        SomaticMutation, Sequencing, FunctionalGenomics, Survival
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2026-02-22 08:59:23 UTC; root
RoxygenNote: 7.3.1
SystemRequirements: GNU make, curl
Config/pak/sysreqs: make libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:33:17 UTC
RemoteUrl: https://github.com/bioc/maftools
RemoteRef: HEAD
RemoteSha: 5abf2c6e314ef9a4ef9a019f04bff07b17c201dd
Author: Anand Mayakonda [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1162-687X>)
Built: R 4.6.0; aarch64-apple-darwin23; 2026-02-22 09:01:54 UTC; unix
