# Layered enrichment analysis of pathways R

## Documentation for package ‘leapR’ version 0.99.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

calcTTest | calcTTest
cluster_enrichment | cluster_enrichment
combine_omics | combine_omics Combine two or more omics matrices into one multi-omics matrix with 'tagged' ids.
correlation_comparison_enrichment | correlation_comparison_enrichment
correlation_enrichment | correlation_enrichment
enrichment_in_abundance | enrichment_in_abundance
enrichment_in_groups | enrichment_in_groups
enrichment_in_relationships | enrichment_in_relationships
get_pathway_information | get_pathway_information
kinasesubstrates | Kinase substrate lists
krbpaths | KEGG, Reactome, BioCarta Pathways
leapR | leapR
longlist | Long list of patient samples
ncipid | NCI Gene lists
read_gene_sets | read_gene_sets
shortlist | A list of pathways and genes that comprise these pathways from msigdb