damidBind-package	damidBind-package
analyse_go_enrichment	analyse_go_enrichment
analysisTable	analysisTable
analysisTable,DamIDResults-method	analysisTable
analyze_go_enrichment	analyse_go_enrichment
browse_igv_regions	browse_igv_regions
calculate_and_add_occupancy_pvals	calculate_and_add_occupancy_pvals
calculate_occupancy	calculate_occupancy
conditionNames	conditionNames
conditionNames,DamIDResults-method	conditionNames
damidBind	damidBind-package
DamIDResults	DamIDResults-class
DamIDResults-class	DamIDResults-class
differential_accessibility	differential_accessibility
differential_binding	differential_binding
enrichedCond1	enrichedCond1
enrichedCond1,DamIDResults-method	enrichedCond1
enrichedCond2	enrichedCond2
enrichedCond2,DamIDResults-method	enrichedCond2
expressed	expressed
expressed,DamIDResults-method	expressed
extract_unique_sample_ids	extract_unique_sample_ids
filter_genes_by_fdr	filter_genes_by_fdr
get_ensdb_genes	get_ensdb_genes
inputData	inputData
inputData,DamIDResults-method	inputData
load_data_genes	load_data_genes
load_data_peaks	load_data_peaks
plot_input_diagnostics	plot_input_diagnostics
plot_limma_diagnostics	plot_limma_diagnostics
plot_venn	plot_venn
plot_volcano	plot_volcano
quantile_normalisation	quantile_normalisation
quantile_normalization	quantile_normalisation
reduce_regions	reduce_regions
sample_labels_by_isolation	sample_labels_by_isolation
