annotate_sce	annotate_sce
as.BlaseData	as.BlaseData
as.BlaseData,SingleCellExperiment-method	as.BlaseData
assign_pseudotime_bins	assign_pseudotime_bins
assign_pseudotime_bins,data.frame-method	assign_pseudotime_bins
assign_pseudotime_bins,Seurat-method	assign_pseudotime_bins
assign_pseudotime_bins,SingleCellExperiment-method	assign_pseudotime_bins
best_bin	mapping-result-best-bin-getter
best_bin,MappingResult-method	mapping-result-best-bin-getter
best_correlation	mapping-result-best-correlation-getter
best_correlation,MappingResult-method	mapping-result-best-correlation-getter
bins	bins-getter
bins,BlaseData-method	bins-getter
bins<-	bins-setter
bins<-,BlaseData-method	bins-setter
BlaseData	BlaseData-class
BlaseData-class	BlaseData-class
bootstrap_iterations	mapping-result-bootstrap-iterations-getter
bootstrap_iterations,MappingResult-method	mapping-result-bootstrap-iterations-getter
bulk_name	mapping-result-bulk-name-getter
bulk_name,MappingResult-method	mapping-result-bulk-name-getter
bulk_name<-	bulk_name-setter
bulk_name<-,MappingResult-method	bulk_name-setter
calculate_gene_peakedness	calculate_gene_peakedness
evaluate_parameters	evaluate_parameters
evaluate_top_n_genes	evaluate_top_n_genes
find_best_params	find_best_params
genes	genes-getter
genes,BlaseData-method	genes-getter
genes<-	genes-setter
genes<-,BlaseData-method	genes-setter
gene_peakedness_spread_selection	gene_peakedness_spread_selection
get_bins_as_bulk	get_bins_as_bulk
get_top_n_genes	get_top_n_genes
MappingResult	MappingResult
MappingResult-class	MappingResult
mapping_history	mapping-result-history-getter
mapping_history,MappingResult-method	mapping-result-history-getter
map_all_best_bins	map_all_best_bins
map_best_bin	map_best_bin
MCA_PF_SCE	MCA_PF_SCE
metric	mapping-result-metric-getter
metric,MappingResult-method	mapping-result-metric-getter
painter_microarray	painter_microarray
plot_bin_population	plot_bin_population
plot_bin_population,SingleCellExperiment-method	plot_bin_population
plot_find_best_params_results	plot_find_best_params_results
plot_gene_peakedness	plot_gene_peakedness
plot_mapping_result	plot_mapping_result
plot_mapping_result,SingleCellExperiment,MappingResult-method	plot_mapping_result
plot_mapping_result_corr	plot_mapping_result_corr
plot_mapping_result_heatmap	plot_mapping_result_heatmap
PRIVATE_.ci	PRIVATE_.ci
PRIVATE_correlation.ci	PRIVATE_correlation.ci
PRIVATE_cosine_similarity.ci	PRIVATE_cosine_similarity.ci
PRIVATE_distance.ci	PRIVATE_distance.ci
pseudobulk_bins	pseudobulk-bins-getter
pseudobulk_bins,BlaseData-method	pseudobulk-bins-getter
pseudobulk_bins<-	pseudobulk-bins-setter
pseudobulk_bins<-,BlaseData-method	pseudobulk-bins-setter
show,BlaseData-method	show_blase_object
show,MappingResult-method	show-MappingResult-method
smooth_gene	smooth_gene
strong_mapping	mapping-result-strong-mapping-getter
strong_mapping,MappingResult-method	mapping-result-strong-mapping-getter
top_2_distance	mapping-result-top-2-distance-getter
top_2_distance,MappingResult-method	mapping-result-top-2-distance-getter
tradeSeq_BLASE_example_sce	tradeSeq_BLASE_example_sce
zhang_2021_heat_shock_bulk	zhang_2021_heat_shock_bulk
