SPONGE-package	SPONGE-package
build_classifier_central_genes	build_classifier_central_genes
calibrate_model	calibrate_model
ceRNA_interactions	ceRNA_interactions
check_and_convert_expression_data	check_and_convert_expression_data
define_modules	define_modules
enrichment_modules	enrichment_modules
ensembl.df	ensembl.df
filter_ceRNA_network	filter_ceRNA_network
fn_combined_centrality	fn_combined_centrality
fn_discretize_spongeffects	fn_discretize_spongeffects
fn_elasticnet	fn_elasticnet
fn_exact_match_summary	fn_exact_match_summary
fn_filter_network	fn_filter_network
fn_gene_miRNA_F_test	fn_gene_miRNA_F_test
fn_get_model_coef	fn_get_model_coef
fn_get_rss	fn_get_rss
fn_get_semi_random_OE	fn_get_semi_random_OE
fn_get_shared_miRNAs	fn_get_shared_miRNAs
fn_OE_module	fn_OE_module
fn_RF_classifier	fn_RF_classifier
fn_weighted_degree	fn_weighted_degree
genes_pairwise_combinations	genes_pairwise_combinations
gene_expr	gene_expr
get_central_modules	get_central_modules
mircode_ensg	mircode_ensg
mircode_symbol	mircode_symbol
mir_expr	mir_expr
mir_interactions	mir_interactions
plot_accuracy_sensitivity_specificity	plot_accuracy_sensitivity_specificity
plot_confusion_matrices	plot_confusion_matrices
plot_density_scores	plot_density_scores
plot_heatmaps	plot_heatmaps
plot_involved_miRNAs_to_modules	plot_involved_miRNAs_to_modules
plot_top_modules	plot_top_modules
precomputed_cov_matrices	precomputed_cov_matrices
precomputed_null_model	precomputed_null_model
prepare_metabric_for_spongEffects	prepare_metabric_for_spongEffects
prepare_tcga_for_spongEffects	prepare_tcga_for_spongEffects
Random_spongEffects	Random_spongEffects
sample_zero_mscor_cov	sample_zero_mscor_cov
sample_zero_mscor_data	sample_zero_mscor_data
SPONGE	SPONGE-package
sponge	sponge
sponge_build_null_model	sponge_build_null_model
sponge_compute_p_values	sponge_compute_p_values
sponge_edge_centralities	sponge_edge_centralities
sponge_gene_miRNA_interaction_filter	sponge_gene_miRNA_interaction_filter
sponge_network	sponge_network
sponge_node_centralities	sponge_node_centralities
sponge_plot_network	sponge_plot_network
sponge_plot_network_centralities	sponge_plot_network_centralities
sponge_plot_simulation_results	sponge_plot_simulation_results
sponge_run_benchmark	sponge_run_benchmark
sponge_subsampling	sponge_subsampling
targetscan_ensg	targetscan_ensg
targetscan_symbol	targetscan_symbol
test_cancer_gene_expr	test_cancer_gene_expr
test_cancer_metadata	test_cancer_metadata
test_cancer_mir_expr	test_cancer_mir_expr
train_cancer_gene_expr	train_cancer_gene_expr
train_cancer_metadata	train_cancer_metadata
train_cancer_mir_expr	train_cancer_mir_expr
train_ceRNA_interactions	train_ceRNA_interactions
train_genes_miRNA_candidates	train_genes_miRNA_candidates
train_network_centralities	train_network_centralities
