Package: Rhisat2
Type: Package
Title: R Wrapper for HISAT2 Aligner
Version: 1.28.0
Authors@R: c(person("Charlotte", "Soneson", role = c("aut", "cre"), 
    email = "charlottesoneson@gmail.com", comment = c(ORCID = "0000-0003-3833-2169")))
SystemRequirements: GNU make
Description: An R interface to the HISAT2 spliced short-read aligner by 
    Kim et al. (2015). The package contains wrapper functions to create a 
    genome index and to perform the read alignment to the generated index.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.3.1
Depends: R (>= 4.4.0)
Suggests: testthat, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
biocViews: Alignment, Sequencing, SplicedAlignment
Imports: txdbmaker, SGSeq, GenomicRanges, methods, utils
URL: https://github.com/fmicompbio/Rhisat2
BugReports: https://github.com/fmicompbio/Rhisat2/issues
Archs: x64
git_url: https://git.bioconductor.org/packages/Rhisat2
git_branch: RELEASE_3_23
git_last_commit: 74b81ca
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: yes
Packaged: 2026-04-28 23:17:50 UTC; biocbuild
Author: Charlotte Soneson [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>)
Maintainer: Charlotte Soneson <charlottesoneson@gmail.com>
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-29 04:57:15 UTC; unix
