Package: PanomiR
Title: Detection of miRNAs that regulate interacting groups of pathways
Version: 1.15.0
Authors@R: c(
    person("Pourya", "Naderi", email = "pouryany@gmail.com",
           role = c("aut", "cre")),
    person("Yue Yang (Alan)", "Teo", email = "yueyang.teo@epfl.ch",
           role = c("aut")),
    person("Ilya", "Sytchev", email = "isytchev@hsph.harvard.edu",
           role = c("aut")),
    person("Winston", "Hide", email = "whide@bidmc.harvard.edu",
           role = c("aut")))
Description: PanomiR is a package to detect miRNAs that target groups
        of pathways from gene expression data. This package provides
        functionality for generating pathway activity profiles,
        determining differentially activated pathways between
        user-specified conditions, determining clusters of pathways via
        the PCxN package, and generating miRNAs targeting clusters of
        pathways. These function can be used separately or sequentially
        to analyze RNA-Seq data.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.2
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown
Config/testthat/edition: 3
biocViews: GeneExpression, GeneSetEnrichment, GeneTarget, miRNA,
        Pathways
Imports: clusterProfiler, dplyr, forcats, GSEABase, igraph, limma,
        metap, org.Hs.eg.db, parallel, preprocessCore, RColorBrewer,
        rlang, tibble, withr, utils
Depends: R (>= 4.2.0)
URL: https://github.com/pouryany/PanomiR
BugReports: https://github.com/pouryany/PanomiR/issues
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev libfftw3-dev libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:14:47 UTC
RemoteUrl: https://github.com/bioc/PanomiR
RemoteRef: HEAD
RemoteSha: eb18fe4f60b933a866ccb0a9dd71cac945badf8c
NeedsCompilation: no
Packaged: 2026-01-25 03:37:55 UTC; root
Author: Pourya Naderi [aut, cre],
  Yue Yang (Alan) Teo [aut],
  Ilya Sytchev [aut],
  Winston Hide [aut]
Maintainer: Pourya Naderi <pouryany@gmail.com>
Built: R 4.6.0; ; 2026-01-25 03:47:22 UTC; unix
