Changes in version 1.1.5 (2024-09-27)
+ Added strand specific analysis parameters. Can now use different threshAdjust and highOutlierTrim values for each strand should they choose.

Changes in version 1.1.4 (2024-09-11)
+ Resolved warnings that popped up during Initial Poisson Distribution testing. Results will not be greatly changed but now PIPETS correctly counts all reads.
+ Fixed problems in Genomic Ranges input method so that it now correctly mirrors the analysis performed for bed file inputs.

Changes in version 1.1.3 (2024-07-12)
+ Changed read quality score parameter from a set value to a minimum, so anything equal to or greater than the input value will be considered

Changes in version 1.1.2 (2024-07-11)
+ Changed PIPETS to use read quality score as a cutoff instead of read length. Functions as better trimming process
+ Input bed files and GRanges objects now both correctly use read quality score
+ Updated Vignette file wording to properly match recent changes

Changes in version 1.1.1 (2024-06-06)
+ Resolved Git inconsistencies, made minor fixes

Changes in version 1.1.0 (2024-05-14)
+ Added Benjamini-Hochberg multiple testing correction to help reduce incidence of Type I error

Changes in version 1.0.0 (2024-02-20)
+ Accepted to Bioconductor
+ Accepts both bedFile and GRanges as input formats
+ Outputs strand-split bed files and strand-split output files containing identified significant 3'-end peaks for both input formats