ATACseqQC-package	ATACseqQC-package
ATACseqQC	ATACseqQC-package
bamQC	bamQC
DB	DB
distanceDyad	distanceDyad
enrichedFragments	enrichedFragments
estimateLibComplexity	estimateLibComplexity
factorFootprints	factorFootprints
footprintsScanner	footprintsScanner
fragSizeDist	fragSizeDist
NFRscore	NFRscore
peakdet	peakdet
plotCorrelation	plotCorrelation
plotFootprints	plotFootprints
prepareBindingSitesList	footprintsScanner
pseudoPausingIndex	pseudoPausingIndex
PTscore	PTscore
pwmscores	pwmscores
readBamFile	readBamFile
readsDupFreq	readsDupFreq
saturationPlot	saturationPlot
shiftGAlignments	shiftGAlignments
shiftGAlignmentsList	shiftGAlignmentsList
shiftReads	shiftReads
splitBam	splitBam
splitGAlignmentsByCut	splitGAlignmentsByCut
TSSEscore	TSSEscore
vPlot	vPlot
writeListOfGAlignments	writeListOfGAlignments
