Package: dominatR
Title: Feature Dominance-based R Package for Genomic Data
Version: 0.99.5
Date: 2025-09-10
Authors@R: c(
    person(
    given = "Simon", 
    family = "Lizarazo", 
    role = c("aut", "cre"), 
    email = "silizarazoch@gmail.com", 
    comment = c(ORCID = "0009-0001-8974-6225")
    ),
    person(
    given = "Ethan", 
    family = "Chen", 
    role = c("aut"), 
    email = "yitian7@illinois.edu"
    ),
    person(
    given = "Rajendra", 
    family = "K C", 
    role = c("aut")
    ),
    person(
    given = "Kevin", 
    family = "Van Bortle", 
    role = c("aut", "cph"), 
    email = "kvbortle@illinois.edu")
    )
Description: dominatR is an R package for quantifying and visualizing feature dominance in datasets.  dominatR applies concepts drawn from physics such as center of mass and shannon's entropy to effectively visualize features (e.g. genes) that are present within a specific context or condition. The package integrates, dataframes, matrices and SummerizedExperiment objects and is able to perform common genomic normalization methods. The key aspect is the generation of plots that serve to highlight context-relevant feature dominance.
License: MIT + file LICENSE
URL: https://github.com/VanBortleLab/dominatR,
        https://vanbortlelab.github.io/dominatR/
BugReports: https://github.com/VanBortleLab/dominatR/issues
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: scales, ggnewscale, SummarizedExperiment, dplyr, rlang,
        ggforce, geomtextpath, ggplot2
Suggests: BiocStyle, airway, tidyverse, knitr, rmarkdown, testthat (>=
        3.0.0), dominatRData
VignetteBuilder: knitr
biocViews: Visualization, Normalization, Classification, GeneExpression
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Config/Needs/website: rmarkdown
git_url: https://git.bioconductor.org/packages/dominatR
git_branch: devel
git_last_commit: 2c155d0
git_last_commit_date: 2025-11-18
Repository: Bioconductor 3.23
Date/Publication: 2025-11-19
NeedsCompilation: no
Packaged: 2025-11-19 21:53:23 UTC; biocbuild
Author: Simon Lizarazo [aut, cre] (ORCID:
    <https://orcid.org/0009-0001-8974-6225>),
  Ethan Chen [aut],
  Rajendra K C [aut],
  Kevin Van Bortle [aut, cph]
Maintainer: Simon Lizarazo <silizarazoch@gmail.com>
Built: R 4.6.0; ; 2025-11-20 06:31:11 UTC; unix
