# Count ratio uncertainty modeling base linear regression

## Documentation for package ‘crumblr’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

crumblr-package | crumblr
buildClusterTree | Perform hierarchical clustering on reducedDim
clr | Centered log ratio transform
clrInv | Inverse of Centered log ratio transform
crumblr | Count ratio uncertainty modeling based linear regression
crumblr-method | Count ratio uncertainty modeling based linear regression
df_cellCounts | Cell counts following interferon treatment
diffTree | Compare difference in estimates between two trees
dmn_mle | MLE for Dirichlet Multinomial
hcl | Cell counts following interferon treatment
IFNCellCounts | Cell counts following interferon treatment
info | Cell counts following interferon treatment
logFrac | Log fractions and precision weights
meanSdPlot | Plot row standard deviations versus rank of row means
plotForest | Forest plot
plotForest-method | Forest plot
plotScatterDensity | Scatter plot with 2D density using viridis colors
plotTreeTest | Plot tree with results from multivariate testing
plotTreeTestBeta | Plot tree coefficients from multivariate testing
standardize | Standardize observations using precision weights
standardize-method | Standardize observations using precision weights
treeTest | Perform multivariate testing along a hierarchy