Package: condiments
Type: Package
Title: Differential Topology, Progression and Differentiation
Authors@R: c(person("Hector", "Roux de Bezieux", role = c("aut", "cre"),
                     email = "hector.rouxdebezieux@berkeley.edu",
		     comment = c(ORCID = "0000-0002-1489-8339")),
		person("Koen", "Van den Berge", role = c("aut" , "ctb")),
		person("Kelly","Street", role = c("aut", "ctb")))
Description: This package encapsulate many functions to conduct a differential topology analysis. It focuses on analyzing an 'omic dataset with multiple conditions. While the package is mostly geared toward scRNASeq, it does not place any restriction on the actual input format.
Version: 1.19.0
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://hectorrdb.github.io/condiments/index.html
Depends: R (>= 4.0)
VignetteBuilder: knitr
biocViews: RNASeq, Sequencing, Software, SingleCell, Transcriptomics,
        MultipleComparison, Visualization
BugReports: https://github.com/HectorRDB/condiments/issues
Imports: slingshot (>= 1.9), mgcv, RANN, stats, SingleCellExperiment,
        SummarizedExperiment, utils, magrittr, dplyr (>= 1.0), Ecume
        (>= 0.9.1), methods, pbapply, matrixStats, BiocParallel,
        TrajectoryUtils, igraph, distinct
RoxygenNote: 7.1.2
Suggests: knitr, testthat, rmarkdown, covr, viridis, ggplot2,
        RColorBrewer, randomForest, tidyr, TSCAN, DelayedMatrixStats
git_url: https://git.bioconductor.org/packages/condiments
git_branch: devel
git_last_commit: 68a222c
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-11-17
NeedsCompilation: no
Packaged: 2025-11-17 21:46:13 UTC; biocbuild
Author: Hector Roux de Bezieux [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1489-8339>),
  Koen Van den Berge [aut, ctb],
  Kelly Street [aut, ctb]
Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu>
Built: R 4.6.0; ; 2025-11-18 11:54:44 UTC; unix
