ad68548974b5d8fab6f755dcfe436f691eb1a378e2faea4cd457b353e9d07bad 1768 CITATION
b75b8c38777604998eec8eab69f6178a76878c3a5a91831bef9583ce9320cd64 2326 DESCRIPTION
2fd7a63dfd33bd59eb0f47f6524bb8d17d288f318863c6ec013453eba3a4893b 2049 INDEX
e433d23b0995ea8ae6319fce083500bff1cff4484e4c32737f0a94fb69d62ff0 3655 Meta/Rd.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
38369a37deeac4d9db625e539611256f569a302201d6063b16c4cc8f3a45d681 3754 Meta/hsearch.rds
2e294fe4f14bb730d8f8c24fb141cf8692659fb7a601b3cb46d4424edc6312f5 3071 Meta/links.rds
3ca3ec2a38d08258d1236813db0114c841add35a57bcc7d083c5bbaf5a80fc31 1662 Meta/nsInfo.rds
f5713738d8ea5b246fb255f94ad0adb6b9bd08056210e3e292f3992f6a7001a6 2041 Meta/package.rds
ccbb1277b4fa7f51ef475272e4a8c1618d3a10eeb927ebd4d73c63c902ddbf5d 330 Meta/vignette.rds
7cde3719b794341b98de0d7fde60ac6eaecca8750b7bf7f4bb87335a0b8bdb67 3396 NAMESPACE
47548a6eab3a9c68b41596f89ec1d0e0907678524077d172d5e66d476660c8e2 18956 NEWS
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/VariantAnnotation
a71d80ddff95ca17e9a3abc2f2090011e61ca5e90b4135861e10effe52dd16b1 2317647 R/VariantAnnotation.rdb
94f860ce989091011b895ad45b848b5fc68b18d974fc3347e31bfc5bc36fd4a7 9999 R/VariantAnnotation.rdx
0b92dc83ebf3c04ad30fc678b5710dd9fd4ca2c0c9b3cd6aa17689566b560b0c 7976 doc/VariantAnnotation.R
53303e3b78305acf9b2169d0e989c9b1c779cbf7203460f1ab14e8569871d79b 20315 doc/VariantAnnotation.Rmd
828b0ce4411557a7b5a06a632e8e9314d3e4c2481947d2f8f008762d303790c0 219452 doc/VariantAnnotation.html
a4ead2a3afb80b40ccff1616877eae4a5fef5c902d1527d574224f0bcf3153aa 1902 doc/ensemblVEP.R
ec9e122cdcee5cb3e3f80f76b2e4d778aa0e3891399839800a6cdf0e0f7f227c 3669 doc/ensemblVEP.Rmd
643df2626e42aba667d852a3fc67763d6e22878d30af9563d43a189ced83ef4e 20337 doc/ensemblVEP.html
04c3d4137f0278c679f07add5c5b0d67128434c09d468cf7b9475c4359128ff3 3253 doc/filterVcf.R
3362ea549967d863c7748fd084ba8c01ef1a8ba27976a107996d4cb0e92ed4bc 12151 doc/filterVcf.Rmd
0531d3dee3f116a5b5bd72b128701161cabc36194972d3db48d31f6b198998a6 27874 doc/filterVcf.html
b9b3785622be1460b6bac1c35874c49d7101be895e6918cd88a933263d7813f9 2376 doc/index.html
5f64f819420f4bc1d99896b9a16f4c7ce57312030d6f1ae4e53bc9366ab3e749 561408 extdata/chr22.vcf.gz
442f0577b64d70fe917d10bd45bb4be87a5ff0f2cf920ed81f58f1ffcb7f6503 637 extdata/chr22.vcf.gz.tbi
77fbcebe26c8d2b44f5b447bb68863c65b344474e28af0e5f1c519236fe97a8b 113168 extdata/chr7-sub.vcf.gz
b4523f43624eff2e1f83638b1278d0118e8d268e546efab0d57402c4e95e174c 744 extdata/chr7-sub.vcf.gz.tbi
accba78d44b1c7bcb3864fed78b90d5b25cdb27a5835a5d6be54c31e16617c07 1892 extdata/ex2.vcf
7c8f635cdd9007338484285ed57ae76119a3bbbc4153d474426f2d5c2e48988f 24819 extdata/gl_chr1.vcf
8151b369980ef1509b6b038a904a102b8c268fff26181257469721488f7e49e7 124778 extdata/h1187-10k.vcf.gz
2c27526a1e6e26319bd5533b77c36973f9b604e4b6ecd82bf3c0fb0881722ed3 441 extdata/h1187-10k.vcf.gz.tbi
4e95e21b0e6d348a942478d8dfb7d79ad7efd9eb25b6deb136aa05c395096faf 355534 extdata/hapmap_exome_chr22.vcf.gz
fdba1dc022cd230ed6abacb0f91d77fc85200b85d8845b36622ad7b84f1d2a27 4762 extdata/hapmap_exome_chr22.vcf.gz.tbi
3b0c3f06840da8909b1da79dc689b0da590c32c6a2b798d0444b37215ef88b2c 3060 extdata/structural.vcf
669516f1c03dad73a84398942f7a51c4542cff675b8cf300464f6262a4f3a485 15956 help/AnIndex
debcce1fd5a5e6e38ef0a5fbd90c01747cd359d89a98c9e6e6dedc1a857b6f83 214866 help/VariantAnnotation.rdb
09a278441e1af1aef0c201624fb8c0c8308854bf4229c0dfa0fbfe3d568d9442 922 help/VariantAnnotation.rdx
2236bcb2451098cd30cc3c6b22eac8f3f3e8ed76ab0475789ed01b8ec786334f 3119 help/aliases.rds
0047ef65aa6175a37028ded094fd7390046ca46921e62db9dbf46917595ccb05 532 help/paths.rds
55d467e0e3e4e2bbb710894dbef0353c746bdb338695d7f49cc272c9741d18b6 37937 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
f575186577550734fd7c85547c98a9466c48848827a6f5261d145590b7815f15 903112 libs/VariantAnnotation.so
b948444bf70552506d21d656cac5a6cf7c98cfafc36d3e757e8ff863eb1ab097 2715 libs/symbols.rds
d09ccd996958776ed2eb455ddfcf4b2a3c68a6e6e297eec79caa38fc961e53f3 10914 scripts/test_Rplinkseq.R
65021a8c0700296b53a66847caf51a9f17af36a3ec39c62ca19326b22e890455 602 unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
34a0d850a3eb3b76a0c05c8fa6672f5702523bffb9af9c588930e20a1100ed7b 3074 unitTests/cases/VarScan_header.vcf
ccbea06376d57fb319955243fb461216ab8e908055bdc4a3259c39e5d2b48621 3700 unitTests/cases/banded_gvcf.vcf
f44c7cae5f783306e3fe82bb272f36623fc41f8470061622ce14175b8e26722f 5894 unitTests/cases/buffer_realloc.vcf
7cba4f809ecf31b0e23f4b12dabbc11a84c0d7acebf1b08ea8d58c54d4f97b77 2392 unitTests/cases/ex1-seq1-90.vcf
68bcbbfa942a5ac6a4bc2348c8e1836a7d06752430c44a4b5143bea25978d350 1836 unitTests/cases/expand.vcf
9c529cb7ef377a69f1fcad902f2f4e86ef7f86ee1e27f03e3268421e80e071da 615 unitTests/cases/fewer-FORMAT-than-GENO.vcf
fc8a5ec0fd16af7f339022a8bc6a23bf4d7e664e02848aba76403d85445d9a1c 1344 unitTests/cases/meta_header.vcf
bd180e4850fbe10f9af34d5e094c5d74c60925c21dd22ac5a3bd08ce0645a27a 554 unitTests/cases/missing-FORMAT-metadata-elt.vcf
35699ce8da15df117b5e4c2e6ba48203dea8c8687d159c4579d9e66c6577bcbd 2970 unitTests/cases/mixedStructural.vcf
e6c2afdb1cda7eb8916faacb0aaa07e7df9befcf36e5e034f899ac82bc939011 439 unitTests/cases/multiple_INFO_fields.vcf
3164a3df37b2eec4f2a98d71953c3c5f30c50ae5abe7ff31ace5abaf222be050 3044 unitTests/cases/negative_FORMAT_Number.vcf
26636195a00503ae44cf1392b66df91324787404dd1db0291c85f3b236207846 287 unitTests/cases/no_FORMAT_column.vcf
13ca74e0702ffdd2302c7db8db03f26c510140cce9c01388b24368701fc74701 574 unitTests/cases/no_GENO_row.vcf
b00c6e2c1a1d3b1044e6440571c4aacb19a8d40a85f6c5326fb69a164d21d59f 300 unitTests/cases/no_INFO_header.vcf
d4bf3b13d4f88a9f791d6773166e9fe412df6ac48c22e39af1843373a430fb26 1679 unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
6a07d38b386364df6cfc421cd66f6ee08505aff48da2316e984b877365837333 1039 unitTests/test_SIFTandPolyPhen.R
2ba125083ce488dabe931be0855345eac8a263423376333faa061d5ed857b6b0 2880 unitTests/test_ScanVcfParam-class.R
ba4845994c533f7394bc8a4982b6603f877891e6a3a1e9f3c8e7d5069ec0be4a 9948 unitTests/test_VCF-class.R
f60c8649c37680d1d707b4b1ff7c4a1f014c1481ba34dbc7805788f18f64f7ef 11060 unitTests/test_VRanges-class.R
907455df20ab06fec9b6e2d74ee29ae2993f5a2aa03d0044b09829c3af0213e4 2899 unitTests/test_expand-methods.R
f7701abb912d4614475816658be27f7ae994cd0e2cd785b036e22f71d18b0468 5533 unitTests/test_filterVcf.R
532e1698f832001c0037feeb2a64c5554ea148e622cfad85b38f67ec76436ca0 7740 unitTests/test_genotypeToSnpMatrix.R
8a7ca23787b4e7c70e1d5e87cfef3049ba95801d6a492140088a1303a2c9732d 3839 unitTests/test_isSNV.R
8845b4e766514de6da3fe0c8e5bd2d4146b671814c32f472b3f4e46fa2efa599 7640 unitTests/test_locateVariants-methods.R
0894ce090b24ca51798051a70bc62eb46e8fe38698baaf9293dc1bb2476fe9bf 4397 unitTests/test_predictCoding-methods.R
fcbeb641ab93cbbc5fd0aa09560d13dd5ae47ca192efa3d8672b6f98bb46a696 9513 unitTests/test_readVcf-methods.R
b467d317c36392215f0d3a2f14bce71f028aafae134ff3b66d6aca13e04f26cb 5429 unitTests/test_scanVcf.R
0c9439d547e2c7f5312daf324f366767c5bac72dc513dccc0cc7cb3f1233dcde 1355 unitTests/test_snpSummary.R
a68d363bb722c94892cb71d265b430c212c4fa25f06fd6d326b0d92d10a1823f 635 unitTests/test_summarizeVariants-methods.R
6e6df5e9ba9acafe67f4d5bda25f8c057799a40991eb8fc0abfd75f0b6eb05e7 1072 unitTests/test_vcfFields.R
87200acc44bb1f4840da36f47e70d323fc46a2442175e7848cddf5bb8da0aeff 4731 unitTests/test_writeVcf-methods.R
