1202ca440cb03d3d8022bbc0a36916bdcb48f44a3213d5a2c3bd9c824b93a04b 727 CITATION
0225656945f343a63082292be0e64c45ca2245331af6f7b382831c09b9c6dad8 4220 DESCRIPTION
b8b41c96c518c23a7795c5cd4b9c69ea10c053bb6cfed2f27199d9fb4c5d0703 2713 INDEX
ad0bf4a112f72e72204d3445e1be5ebc08b30eb4939a5d9e02f28378a5118c87 1189 LICENSE
e7a9f5d90f3238778c5e2ea241489ea92bf5cc1ec1e512910b723310c84c7e0f 2362 Meta/Rd.rds
04abba1fbf14e9ebfa5018fd8a740842010982b85aad6aef0f672275b088d982 122 Meta/features.rds
1970593c375ffcca857fac615f41f7311b54379cfc037717d121a7fcd7aa9259 2407 Meta/hsearch.rds
049117ee518adb9fd4955ac6c7bde770f02c6af7c3287c42cf4fe2308cc97a50 1489 Meta/links.rds
d471c1510886a6f1ab517176176c6419bef13fb51e8355bd92d8e0d533e9e3b6 3109 Meta/nsInfo.rds
e305933bd3f57fbcf18011c264a97ab9b62e73a5edfd03655da99227aba99cfb 3045 Meta/package.rds
1dd1c01886c5926211c831bedf003d17ac90fc987d6a927d1f95db9b1e3cf628 242 Meta/vignette.rds
6a1e2d401c2c155d3763ca1cc5872e0337fc0c484703fcd73c3832ffd4998097 9583 NAMESPACE
a9eff6c60493edb0e2569c3993bd83d3f505ac201d9ccb1866bbfb87a3b1ba47 12243 NEWS
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/SpliceWiz
73b694dc785357d707c40ff7e560062f678ef2af3203ede16d3daf6bf6e2de79 2398878 R/SpliceWiz.rdb
9496f93be53ad62ec401c96f20e843145a2843da4c97cccf04ba09458e605452 12757 R/SpliceWiz.rdx
f48b92516dbd0f9f20b7b155e4b20506cb50b56b257b58172fdf6a51d629ecf2 3267 README.md
137ae78c5e63c32ee293ef1eb519a4e172dd7c716314c0127ef8f5a5300cda01 9686 doc/SW_Cookbook.R
64d427ae78f68964062f6e190c54216973acb13891a6c248cc63198ebc845170 22547 doc/SW_Cookbook.Rmd
6270f7871560ce57a7a9e177569645b70784ab2c3ce275de7051d11d3cf3aa19 83558 doc/SW_Cookbook.html
f803025505ea7fa1c02d2609a33ee0a677a642b303703e2eb357436c8bcf263d 18488 doc/SW_QuickStart.R
ba9062e9cfcf588f19b2b89d3d10b58d94efa8d62fa534584b2b7545a8735cc1 72472 doc/SW_QuickStart.Rmd
5c2c5e91ac5efd4487aa7a2f6cf1889596e67dc7fc52c9b4d00d79900cdeadb6 3577282 doc/SW_QuickStart.html
09c6c1c13ba78de240c715fa00e69d14ef67ce42565040331de3a84fbd7dfd48 1838 doc/index.html
0daf61408887760a83a2ccf1d2d2fd95bc05375decc3e95c6f0d353c8cf48642 104453 extdata/02H003.cov
35d7cc90e3133c5182a85a6a8eb04dcc29766b5b1e4ffbee20ecad3453ab6868 89904 extdata/02H025.cov
36bba869c6012d07e1dd551a3c6558738d0e805400bd9b5de99ca8d33306adff 100242 extdata/02H026.cov
ac67493e3219c5dfa2555284d9c296576f407967f1df494f18777b127eeb734c 112028 extdata/02H033.cov
155d8ca57e101e042ccff6bbdbdf5bc1e24f92044881824ce1e454cf6e712a5f 91422 extdata/02H043.cov
e8620f255292b6c2fec12bd8a23f998a5e16367c1e011f4d62571c2feaa0182a 111296 extdata/02H046.cov
892546f3017b217af4cdb5c3dc9247a42bfcab182b36c74c1dc557bae02dda54 53176 extdata/example_NxtSE.Rds
c533b1418386791843c4ad9f2e0726eb626dc012cacab69ac4e0a68a1bcdfcec 62087 extdata/example_NxtSE_novel.Rds
ed7f7ae7a17b613e7fa35408172fbf645f1d986b3ac43c52fecb6463111ab7c6 22368 extdata/labLogo.jpg
04e5106b70673a39b9e561344aa63c0b180bc484a9e6d6f84cbfd5184531c42f 651 extdata/spoof_1.fq
013861e9260c87e27af52cc1dfce781f76e892a6a3f8b68614be05760fabf9d7 651 extdata/spoof_2.fq
1c38d7300b64d32ba8d55abca857eb2b0d402d63e93c52347802cd392b2d97f2 2421 extra-input-files/Human_hg19_nonPolyA_ROI.bed
31abce91052f0bbc9ed32fe774339400cb2cf0042d7427a313b1f76267c8d603 2421 extra-input-files/Human_hg38_nonPolyA_ROI.bed
2ee2b0580e5508e2d46913a9fec00b2abc557c15b93ac004eaf040f73b91c317 3778 extra-input-files/Mouse_mm10_nonPolyA_ROI.bed
d6fbe7a36f692a942f9985a4b4fe211a1034cca44b6730de0f27aaf28363eefe 3784 extra-input-files/Mouse_mm9_nonPolyA_ROI.bed
0b7dc3bb64a75a9b41bd08071a07fc50c8e1a459d0827d5096c92df5c70e727d 4783 help/AnIndex
a994f80cf03e811c10ad14441c83ef561e629f224a56d3dee49cfca7a8711a66 199451 help/SpliceWiz.rdb
afb27ffc3cf9bc1818cb406bc8c2169c2b708c99254715ddf452ef9ae4ed6c15 846 help/SpliceWiz.rdx
96bb7b7ec5c4a6b9c3bb11d1ec14a610b501a9578b20d053c0acac892957aafe 1435 help/aliases.rds
09dfbe0fe0c7dfc7e3cab3a2400a32ed833dbe00f3548c43915fdc9b85d45983 508 help/paths.rds
6419cc024f6795ee9651d1c0d3e1861bb3bd006d8b1879a41d2ffef0ff70e8ae 24298 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
3e936833e82d8fe61a468ff2070e63635ee312d2801ca6d1b4a0212e007904c4 3270 htslib_version/DESCRIPTION
0183097ce0ae4a5fb24b37f62537181c2de76fc73419fa28524ad03407c30a8f 9405 htslib_version/NAMESPACE
64319594582cfec9bec820cae251bc1ab232e7f9094d34bd8339525fdd3e5377 11603 htslib_version/R/ProcessBAM_hts.R
e4954537289b9f5d656e136bf9075427cbed990ffa4e9c0dcf1a5133c03d66f2 1237 htslib_version/README.md
c3c37c9564a287ec31519e604c4956afeb1e7523eab7df100f6fd1fbb5139a29 20350 htslib_version/src/BAM2blocks_htslib.cpp
0ba45f5aba95f82c67a81f317de9ae683d5f9f337fade0adc3bf862d32f92eda 3845 htslib_version/src/BAM2blocks_htslib.h
c2c3cfe41dbd6d3f2b67552130fe1d778ad173ca910d636a5e620773806d3399 366 htslib_version/src/Makevars.in
5d57fe6ff9b1d8f50e91956109a19da6da8e2338e1badafa91cf9297baa3c1ea 336 htslib_version/src/Makevars.win
9d5bbb04943e57a71212c7c3bfe745e99d5802fd04b591a618c77a7235cf5547 29455 htslib_version/src/hts_main.cpp
00089d84c81b8daacb175384278f059868c486929c4300adab26e2eeb0cd160d 3073 htslib_version/src/hts_main.h
406b23e136e9a3cef1735f10a284cb5ea02426f1fc5de5696b2606ae00c1fb69 11395 htslib_version/src/swEngine_hts.cpp
15136f94012bf7889f7870cce930e04c5879565a31c78030d7f5715720e95309 3518 htslib_version/src/swEngine_hts.h
79776616cc8ed53570dbfb09ac905b2711f068cd27776a9d05edf3c686a80c76 1730 htslib_version/tests/testthat/test-OpenMP-hts.R
81c8d40ad1dea494ee51d9ebe97d6f3e6c4761990a9736dd88dd9195f557d32f 2172 htslib_version/tests/testthat/test-SpliceWiz-hts.R
ed3d97802ac083818385a799964297d25a4aa1d17970714174f51f7b640b4312 495912 libs/SpliceWiz.so
db58c32fbd2ac19327b8fbffa4e61276d3f5084b600430c469bc10c809dc2865 27353 libs/symbols.rds
3be06180776e3ebdbbe8b5714b283b218f522c687af36460488f46befeba5c2d 2539 scripts/make-data.R
