Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.48.0
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).  It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL: https://github.com/juliangehring/SomaticSignatures
Imports: S4Vectors, IRanges, Seqinfo, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.5.0), VariantAnnotation, GenomicRanges, NMF
Suggests: testthat, knitr, parallel, GenomeInfoDb,
        BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
        ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: RELEASE_3_23
git_last_commit: ea2dfc1
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-06-02
NeedsCompilation: no
Packaged: 2026-06-02 22:37:21 UTC; biocbuild
Built: R 4.6.0; ; 2026-06-03 14:38:52 UTC; unix
