Package: Rbec
Type: Package
Title: Rbec: a tool for analysis of amplicon sequencing data from
        synthetic microbial communities
Version: 1.19.0
Authors@R: person("Pengfan", "Zhang", email = "pzhang@mpipz.mpg.de", role = c("aut", "cre"))
Description: Rbec is a adapted version of DADA2 for analyzing amplicon
        sequencing data from synthetic communities (SynComs), where the
        reference sequences for each strain exists. Rbec can not only
        accurately profile the microbial compositions in SynComs, but
        also predict the contaminants in SynCom samples.
License: LGPL-3
Imports: Rcpp (>= 1.0.6), dada2, ggplot2, readr, doParallel, foreach,
        grDevices, stats, utils
LinkingTo: Rcpp
RoxygenNote: 7.1.1
biocViews: Sequencing, MicrobialStrain, Microbiome
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:08:40 UTC
RemoteUrl: https://github.com/bioc/Rbec
RemoteRef: HEAD
RemoteSha: 89d9a5dab4feb5e331f8992387259fcb7882844f
NeedsCompilation: yes
Packaged: 2026-01-16 22:00:50 UTC; root
Author: Pengfan Zhang [aut, cre]
Maintainer: Pengfan Zhang <pzhang@mpipz.mpg.de>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-01-16 22:05:23 UTC; unix
