Package: DegNorm
Type: Package
Title: DegNorm: degradation normalization for RNA-seq data
Version: 1.21.0
Date: 2025-08-11
Authors@R: 
    person("bin", "Xiong",
        email = "binxiong2012@u.northwestern.edu",
        role = c("aut"))
    person("Ji-Ping", "Wang",
        email = "jzwang@northwestern.edu",
        role = c("aut", "cre"),
        comment = c(ORCID="0000-0002-8398-939X"))
biocViews: RNASeq, Normalization, GeneExpression, Alignment,Coverage,
        DifferentialExpression, BatchEffect,Software,Sequencing,
        ImmunoOncology, QualityControl, DataImport
Description: This package performs degradation normalization in bulk
        RNA-seq data to improve differential expression analysis
        accuracy. It provides estimates for each gene within each
        sample.
License: LGPL (>= 3)
Depends: R (>= 4.0.0), methods
Imports: Rcpp (>= 1.0.2),GenomicFeatures, txdbmaker, parallel, foreach,
        S4Vectors, doParallel, Rsamtools (>= 1.31.2),
        GenomicAlignments, heatmaply, data.table, stats, ggplot2,
        GenomicRanges, IRanges, plyr, plotly, utils,viridis
LinkingTo: Rcpp, RcppArmadillo,S4Vectors,IRanges
NeedsCompilation: yes
Packaged: 2026-03-10 09:16:59 UTC; root
Suggests: knitr,rmarkdown,formatR
VignetteBuilder: knitr
BugReports: https://github.com/jipingw/DegNorm/issues
Config/pak/sysreqs: make libmagick++-dev gsfonts libbz2-dev libicu-dev
        liblzma-dev libpng-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:59:52 UTC
RemoteUrl: https://github.com/bioc/DegNorm
RemoteRef: HEAD
RemoteSha: caacface537f1c68fbbeed489b382a0b791204a1
Author: Ji-Ping Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8398-939X>)
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-03-10 18:59:38 UTC; unix
