Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
        cellularity
Version: 1.59.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda <oscar.rueda@cancer.org.uk>,  Florian Markowetz <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
 <Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
        convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
        createBinaryImage.R colorCorrection.R searchStructures.R
        segmentStructures.R classifyStructures.R numberOfNeighbors.R
        segmentCytoplasma.R segmentImage.R createClassifier.R
        kernelSmoother.R paintCells.R classifyCells.R
        determineCellularity.R calculateCellularity.R findSlices.R
        parseFinalScan.R classificationAperio.R processAperio.R
        Phansalkar_threshold.R SauvolaThreshold.R
        calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
        localORThreshold.R oregonThreshold.R localThreshold.R
        calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
        labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2025-11-17 21:46:38 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/CRImage
git_branch: devel
git_last_commit: 850c6ef
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.23
Date/Publication: 2025-11-17
NeedsCompilation: no
Built: R 4.6.0; ; 2025-11-18 11:55:21 UTC; unix
