Package: smoppix
Type: Package
Title: Analyze Single Molecule Spatial Omics Data Using the
        Probabilistic Index
Version: 1.3.1
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Test for univariate and bivariate spatial patterns in 
    spatial omics data with single-molecule resolution. The tests implemented 
    allow for analysis of nested designs and are automatically calibrated to different
    biological specimens. Tests for aggregation, colocalization, gradients and vicinity to cell edge or centroid are provided.
License: GPL-2
Encoding: UTF-8
Imports: spatstat.geom(>=
        3.2.0),spatstat.random,methods,BiocParallel,SummarizedExperiment,SpatialExperiment,scam,Rdpack,stats,utils,extraDistr,lmerTest,lme4,ggplot2,graphics,grDevices,Rcpp
        (>= 1.0.11),spatstat.model,openxlsx,Rfast
Suggests:
        testthat,rmarkdown,knitr,DropletUtils,polyCub,RImageJROI,sp,ape,htmltools,funkycells,glmnet,doParallel
RdMacros: Rdpack
RoxygenNote: 7.3.3
biocViews: Transcriptomics, Spatial, SingleCell
Depends: R (>= 4.5.0)
VignetteBuilder: knitr
BugReports: https://github.com/sthawinke/smoppix/issues
URL: https://github.com/sthawinke/smoppix
LinkingTo: Rcpp
git_url: https://git.bioconductor.org/packages/smoppix
git_branch: devel
git_last_commit: 24524f0
git_last_commit_date: 2025-11-26
Repository: Bioconductor 3.23
Date/Publication: 2025-11-26
NeedsCompilation: yes
Packaged: 2025-11-26 22:44:15 UTC; biocbuild
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.6.0; aarch64-apple-darwin20; 2025-11-27 04:54:01 UTC; unix
