Package: scviR
Date: 2025-05-02
Title: experimental inferface from R to scvi-tools
Version: 1.11.1
Authors@R: 
    c(person(
        "Vincent", "Carey", role = c("aut", "cre"),
        email = "stvjc@channing.harvard.edu",
        comment = c(ORCID = "0000-0003-4046-0063")
     )
    )
Description: This package defines interfaces from R to scvi-tools.  A
	vignette works through the totalVI tutorial for analyzing CITE-seq
	data.  Another vignette compares outputs of Chapter 12 of the
	OSCA book with analogous outputs based on totalVI quantifications.
	Future work will address other components of scvi-tools, with a 
	focus on building understanding of probabilistic methods based
	on variational autoencoders.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3), basilisk, shiny, SingleCellExperiment
Imports: reticulate, BiocFileCache, utils, pheatmap,
        SummarizedExperiment, S4Vectors, limma, scater, stats,
        MatrixGenerics
Suggests: knitr, testthat, reshape2, ggplot2, rhdf5, BiocStyle
VignetteBuilder: knitr
biocViews: Infrastructure, SingleCell, DataImport
RoxygenNote: 7.3.3
URL: https://github.com/vjcitn/scviR
BugReports: https://github.com/vjcitn/scviR/issues
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/scviR
git_branch: devel
git_last_commit: 1441fb1
git_last_commit_date: 2026-02-04
Repository: Bioconductor 3.23
Date/Publication: 2026-02-27
NeedsCompilation: no
Packaged: 2026-02-27 22:42:45 UTC; biocbuild
Author: Vincent Carey [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4046-0063>)
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Built: R 4.6.0; ; 2026-02-28 04:47:26 UTC; unix
