Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.17.2
Authors@R: 
    c( 
     person(given = "Brian",
           family = "Schilder",
           role = c("cre","fnd"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191"))
    )      
Description: 
    `orthogene` is an R package for easy mapping of orthologous genes 
    across hundreds of species. It pulls up-to-date gene ortholog mappings 
    across **700+ organisms**. 
    It also provides various utility functions to aggregate/expand 
    common objects (e.g. data.frames, gene expression matrices, lists) 
    using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, 
    both within- and between-species.  
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: GPL-3
Depends: R (>= 4.5.0)
VignetteBuilder: knitr
biocViews: Genetics, ComparativeGenomics, Preprocessing, Phylogenetics,
        Transcriptomics, GeneExpression
Imports: dplyr, methods, stats, utils, Matrix, jsonlite, homologene,
        gprofiler2, babelgene, data.table, parallel, ggplot2, ggpubr,
        patchwork, DelayedArray, repmis, ggtree, tools, magrittr
Suggests: remotes, knitr, BiocStyle, markdown, rmarkdown, testthat (>=
        3.0.0), piggyback, magick, GenomeInfoDbData, ape, phytools,
        rphylopic (>= 1.0.0), TreeTools, ggimage, OmaDB
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/testthat/edition: 3
Config/rcmdcheck/_R_CHECK_FORCE_SUGGESTS_: false
git_url: https://git.bioconductor.org/packages/orthogene
git_branch: devel
git_last_commit: 3569148
git_last_commit_date: 2026-01-07
Repository: Bioconductor 3.23
Date/Publication: 2026-01-07
NeedsCompilation: no
Packaged: 2026-01-07 22:12:42 UTC; biocbuild
Author: Brian Schilder [cre, fnd] (ORCID:
    <https://orcid.org/0000-0001-5949-2191>)
Maintainer: Brian Schilder <brian_schilder@alumni.brown.edu>
Built: R 4.6.0; ; 2026-01-08 04:43:37 UTC; unix
