epiSeeker-package	epiSeeker-package
.	dotFun
.epiSeekerEnv	dot-epiSeekerEnv
annotateSeq	annotateSeq
arrange.GRanges	arrange.GRanges
as.data.frame.csAnno	as.data.frame.csAnno
as.GRanges	as.GRanges
bin_vector	bin_vector
bmData	bmData
bmData-class	bmData-class
bmData-methods	getBmMatrix-methods
BSseq-methods	getBmMatrix-methods
check_bin	check_bin
check_extension	check_extension
check_windows	check_windows
combine_csAnno	combine_csAnno
create_regex_patterns_negative	create_regex_patterns_negative
create_regex_patterns_positive	create_regex_patterns_positive
csAnno-class	csAnno-class
demo_bmdata	demo_bmdata
demo_peak	demo_peak
downloadGEObedFiles	downloadGEObedFiles
downloadGSMbedFiles	downloadGSMbedFiles
dropAnno	dropAnno
enrichAnnoOverlap	enrichAnnoOverlap
enrichPeakOverlap	enrichPeakOverlap
epiSeeker	epiSeeker-package
epiSeekerCache	epiSeekerCache
extend_gr	extend_gr
filter.GRanges	filter.GRanges
getAnnoStat	getAnnoStat
getBioRegion	getBioRegion
getBmMatrix	getBmMatrix-methods
getBmMatrix,	getBmMatrix-methods
getBmMatrix,ANY,bmData-method	getBmMatrix-methods
getBmMatrix,ANY,BSseq-method	getBmMatrix-methods
getBmMatrix.bmData	getBmMatrix.bmData
getBmMatrix.BSseq	getBmMatrix.BSseq
getGeneAnno	getGeneAnno
getGenomicAnnotation	getGenomicAnnotation
getGEOgenomeVersion	getGEOgenomeVersion
getGEOInfo	getGEOInfo
getGEOspecies	getGEOspecies
getMotifMatrix	getMotifMatrix
getNearestFeatureIndicesAndDistances	getNearestFeatureIndicesAndDistances
getPromoters	getPromoters
getSampleFiles	getSampleFiles
getTagMatrix	getTagMatrix
getTagMatrix.internal	getTagMatrix.internal
getTagMatrix_body	getTagMatrix_body
getTagMatrix_body_internal	getTagMatrix_body_internal
getTagMatrix_site	getTagMatrix_site
grange2mt	grange2mt
gsminfo	gsminfo
loadTxDb	loadTxDb
makeBmDataFromData	makeBmDataFromData-methods
makeBmDataFromData,CompressedGRangesList-method	makeBmDataFromData-methods
makeBmDataFromData,data.frame-method	makeBmDataFromData-methods
makeBmDataFromData,GRanges-method	makeBmDataFromData-methods
makeBmDataFromData,list-method	makeBmDataFromData-methods
makeBmDataFromData.internal	makeBmDataFromData
makeBmDataFromFiles	makeBmDataFromFiles
mutate.GRanges	mutate.GRanges
overlap	overlap
parse_peak	parse_peak
peakAnno	peakAnno
peakAnnoList	peakAnnoList
plotAnnoBar	plotAnnoBar-methods
plotAnnoBar,csAnno,ANY-method	plotAnnoBar-methods
plotAnnoBar,csAnno-method	csAnno-class
plotAnnoBar,list-method	plotAnnoBar-methods
plotAnnoBar.data.frame	plotAnnoBar
plotAnnoPie	plotAnnoPie-methods
plotAnnoPie,csAnno,ANY-method	plotAnnoPie-methods
plotAnnoPie,csAnno-method	csAnno-class
plotAnnoPie.csAnno	plotAnnoPie
plotBmProf	plotBmProf
plotCov	plotCov
plotDistToTSS	plotDistToTSS-methods
plotDistToTSS,csAnno,ANY-method	plotDistToTSS-methods
plotDistToTSS,csAnno-method	csAnno-class
plotDistToTSS,list-method	plotDistToTSS-methods
plotDistToTSS.data.frame	plotDistToTSS.data.frame
plotGeneTrack	plotGeneTrack
plotMotifProf	plotMotifProf
plotPeakHeatmap	plotPeakHeatmap
plotPeakHeatmap_sub	plotPeakHeatmap_sub
plotPeakHeatmap_sub.internal	plotPeakHeatmap_sub.internal
plotPeakProf	plotPeakProf
pwm_obj	pwm_obj
readPeakFile	readPeakFile
reexports	reexports
rel	reexports
rename.GRanges	rename.GRanges
seq2gene	seq2gene
seq2gene_result	seq2gene_result
show	show-methods
show,csAnno,ANY-method	show-methods
show,csAnno-method	csAnno-class
shuffle	shuffle
subset,csAnno-method	csAnno-class
tagMatrix	tagMatrix
ucsc_release	gsminfo
upsetplot	upsetplot-methods
upsetplot,csAnno-method	csAnno-class
vennpie	vennpie-methods
vennpie,csAnno-method	csAnno-class
vennplot	vennplot
vennplot.peakfile	vennplot.peakfile
