# Protein motifs analysis and visualisation

## Documentation for package ‘PMScanR’ version 1.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

extractProteinMotifs | Extract protein motifs form a file in PSA format
extractSegments | Extract sequence fragments from a list of sequences
freqPie | Create a pie chart showing protein motif distribution
gff2matrix | Convert GFF to a binary occurrence matrix
matrix2hm | Generate a heatmap from a matrix
matrixToSquareHeatmap | Generate a square heatmap from a matrix
readProsite | Convert PROSITE format to a GFF-like Data Frame
readPsa | Parse a PSA (PROSITE Scan ASCII) File
runPMScanRShiny | Launch the PMScanR Shiny Application
runPsScan | Run PS-Scan with Caching and Improved Execution