Package: OAtools
Title: Analysis of OpenArray PCR Data
Version: 0.99.9
Description: Provides a suite of R functions to analyze gene expression 
    experiments on the OpenArray real-time PCR platform. OAtools fits
    logistic regressions to fluorescence curves to distinguish between 
    real amplification and false positives. OAtools supports data import, 
    analysis, and visualization through plots and a dynamic HTML report.
Authors@R: 
    person("Aidan", "Shea", 
    email = "aidantshea@gmail.com", 
    role = c("aut", "cre"),
    comment = c(ORCID = "0009-0001-9256-7439"))
License: GPL (>= 3)
LazyData: FALSE
Depends: R (>= 4.6)
Imports: basilisk (>= 1.20.0), Biobase (>= 2.70.0), dplyr (>= 1.1.4),
        DT (>= 0.34.0), ggplot2 (>= 3.5.2), janitor (>= 2.2.1), methods
        (>= 4.5.2), plotly (>= 4.11.0), purrr (>= 1.2.0), ReadqPCR (>=
        1.56.0), readxl (>= 1.4.5), reticulate (>= 1.43.0), rlang (>=
        1.1.6), rmarkdown (>= 2.29), S4Vectors (>= 0.48.0),
        SummarizedExperiment (>= 1.40.0), tibble (>= 3.3.0), tidyr (>=
        1.3.1)
Suggests: testthat (>= 3.0.0), knitr, kableExtra (>= 1.4.0), NormqPCR
        (>= 1.56.0), BiocManager (>= 1.30.27)
biocViews: qPCR, GeneExpression, DataImport, Regression
BugReports: https://github.com/uwvirology-ngs/OAtools/issues
URL: https://github.com/uwvirology-ngs/OAtools
BiocType: Software
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Encoding: UTF-8
VignetteBuilder: knitr
StagedInstall: no
git_url: https://git.bioconductor.org/packages/OAtools
git_branch: devel
git_last_commit: 884e7e6
git_last_commit_date: 2026-02-09
Repository: Bioconductor 3.23
Date/Publication: 2026-02-27
NeedsCompilation: no
Packaged: 2026-02-27 22:13:03 UTC; biocbuild
Author: Aidan Shea [aut, cre] (ORCID: <https://orcid.org/0009-0001-9256-7439>)
Maintainer: Aidan Shea <aidantshea@gmail.com>
Built: R 4.6.0; ; 2026-02-28 04:40:10 UTC; unix
