# Network Analysis for MS-based Proteomics Experiments

## Documentation for package ‘MSstatsBioNet’ version 1.3.5

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

.populateHgncIdsInDataFrame | Populate HGNC IDs in Data Frame
.populateHgncNamesInDataFrame | Populate HGNC Names in Data Frame
.populateKinaseInfoInDataFrame | Populate Kinase Info in Data Frame
.populatePhophataseInfoInDataFrame | Populate Phosphatase Info in Data Frame
.populateTranscriptionFactorInfoInDataFrame | Populate Transcription Factor Info in Data Frame
.populateUniprotIdsInDataFrame | Populate Uniprot IDs in Data Frame
.validateAnnotateProteinInfoFromIndraInput | Validate Annotate Protein Info Input
annotateProteinInfoFromIndra | Annotate Protein Information from Indra
cytoscapeNetwork | Render a Cytoscape network visualisation
cytoscapeNetworkOutput | Shiny output binding for cytoscapeNetwork
exportNetworkToHTML | Export network data with Cytoscape visualization
filterSubnetworkByContext | Filter a subnetwork by contextual relevance
getSubnetworkFromIndra | Get subnetwork from INDRA database
previewNetworkInBrowser | Preview network in browser
renderCytoscapeNetwork | Render a Cytoscape network in a Shiny application. This function is used to render a Cytoscape network visualization within a Shiny application.