# Differentially regulated genes from scRNA-seq data

## Documentation for package ‘DifferentialRegulation’ version 2.9.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

DifferentialRegulation-package | Differentially regulated genes from scRNA-seq data
compute_PB_counts | Discover differentially regulated genes
DifferentialRegulation | Discover differentially regulated genes from single-cell RNA-seq data
DifferentialRegulation_bulk | Discover differentially regulated genes from bulk RNA-seq data
load_bulk_EC | Create a list containing the equivalence classes objects for the bulk RNA-seq data
load_bulk_US | Creates a SummarizedExperiment containing the estimated US counts for the bulk RNA-seq data
load_EC | Create a list containing the equivalence classes objects for the single-cell RNA-seq data
load_USA | Creates a SingleCellExperiment containing the estimated USA counts for the single-cell RNA-seq data
plot_bulk_pi | Plot the estimated proportions of US counts in each group - bulk RNA-seq data
plot_bulk_traceplot | Traceplot of the posterior chain of the proportion (i.e., pi) of unspliced (U) counts in each group - bulk RNA-seq data
plot_pi | Plot the estimated proportions of US or USA counts in each group - single-cell RNA-seq data
plot_traceplot | Traceplot of the posterior chain of the proportion (i.e., pi) of unspliced (U) counts in each group - single-cell RNA-seq data