@article{HilbertCurve_first,
author={David Hilbert},
title={{\"Uber stetige Abbildungen einer Linie auf ein Fl\"achenst\"uck}},
journal={Mathematische Annalen},
volume={38},
year={1891},
pages={459},
}

@article{PeanoCurve_first,
author={Giuseppe Peano},
title={Sur une courbe qui remplit toute une aire plaine},
journal={Mathematische Annalen},
volume={36},
year={1890},
pages={157},
}

@article{HilbertVisualization_first,
title={Pixel-Oriented Visualization Techniques for Exploring Very 
Large Data Bases},
Author={Daniel A. Keim},
journal={J. Comp. Graph. Stat.}, 
Volume={5},
year={1996}, 
pages={58-77},
url={http://www.jstor.org/stable/1390753},
}

@article{HistMeth_ChipSeq,
author={Artem Barski and Suresh Cuddapah and Kairong Cui and Tae-Young Roh and Dustin E.
Schones and Zhibin Wang and Gang Wei and Iouri Chepelev and Keji Zhao}, 
title={High-Resolution Profiling of Histone Methylations in the Human Genome}, 
journal={Cell},
Volume={129}, 
year={2007}, 
Pages={823-837},
doi={10.1016/j.cell.2007.05.009}
}

@misc{Maq,
author={Heng Li},
title={Maq: Mapping with Alignment qualities},
url={http://maq.sourceforg.net},
}

@manual{R,
 title        = {R: A Language and Environment for Statistical
                       Computing},
       author       = {{R Development Core Team}},
       organization = {R Foundation for Statistical Computing},
       address      = {Vienna, Austria},
       year         = 2008,
       note         = {{ISBN} 3-900051-07-0},
       url          = {http://www.R-project.org}
     }
     

@Article{BioC,
  author = {Robert C Gentleman and Vincent
J. Carey and Douglas M. Bates and 
Ben Bolstad and Marcel
Dettling and Sandrine Dudoit and Byron Ellis and
Laurent Gautier
and Yongchao Ge and Jeff Gentry and Kurt Hornik and 
Torsten
Hothorn and Wolfgang Huber and Stefano Iacus and  Rafael
Irizarry
and Friedrich Leisch and Cheng Li and Martin Maechler and Anthony J. Rossini
and Gunther Sawitzki and Colin Smith and Gordon Smyth and Luke Tierney
and Jean Y. H. Yang and  Jianhua Zhang},
  title = {Bioconductor: Open software development for 
computational biology and bioinformatics},
  journal = {Genome Biology},
  volume = {5},
  year = {2004},
  pages = {R80},
  url = {http://genomebiology.com/2004/5/10/R80}
}

@misc{gtkmm,
title={gtkmm: {C++} Interfaces for {GTK+} and {Gnome}},
author={Murray Cumming and Daniel Elstner and others},
url={http://www.gtkmm.org/}
}

@Manual{GenomeGraphs,
    title = {GenomeGraphs: Plotting genomic information from Ensembl},
    author = {Steffen Durinck and James Bullard},
    year = {},
    note = {R package version 0.0.9},
    url={http://www.bioconductor.org/packages/bioc/html/GenomeGraphs.html}
  }

 @Manual{ShortRead,
    title = {ShortRead: Base classes and methods for high-throughput short-read sequencing data.},
    author = {Martin Morgan},
    year = {},
    note = {R package version 0.1.23},
  }

@misc{HilbertVisBioinf,
   title = {Visualisation of Genomic Data with Space-filling Curves},
   author = {Simon Anders},
   year = {2008},
   howpublished = {Submitted}
}

@misc{ShortRead_and_HilbertCurveDisplay,
   title = {Processing and Visualisation of High-Throughput Sequencing 
      with {ShortRead} and {HilbertVis}},
   author={Simon Anders},
   year = {2008},
   howpublished = {Vignette, to be distributed with Bioconductor package ``ShortRead''}
}   

@article{ UCSC_genome_browser,
author = {Kent, W.J. and Sugnet, C. W. and Furey, T. S. and Roskin, K.M. and Pringle, T. H. 
   and Zahler, A. M. and Haussler, D.},
title = {The Human Genome Browser at {UCSC}},
journal = {Genome Res.},
volume = {12}, 
pages={996-1006},
year=2002},
}

@misc{GFF_Spec,
   title={{GFF} ({General Feature Format}) Specifications Document},
   author={Richard Durbin and David Haussler and others},
   howpublished={\url{http://www.sanger.ac.uk/Software/formats/GFF/GFF_Spec.shtml}},
   year={2000},
}

@misc{Wiggle_Spec,
   title={Wiggle Track Format ({WIG})},
   key={Wig},
   howpublished={\url{http://genome.ucsc.edu/goldenPath/help/wiggle.html}},
}   
