Package: uSORT
Title: uSORT: A self-refining ordering pipeline for gene selection
Version: 1.36.0
Author: Mai Chan Lau, Hao Chen, Jinmiao Chen
Description: This package is designed to uncover the intrinsic cell
        progression path from single-cell RNA-seq data. It incorporates
        data pre-processing, preliminary PCA gene selection,
        preliminary cell ordering, feature selection, refined cell
        ordering, and post-analysis interpretation and visualization.
Maintainer: Hao Chen <chen_hao@immunol.a-star.edu.sg>
biocViews: ImmunoOncology, RNASeq, GUI, CellBiology, DNASeq
Depends: R (>= 3.3.0), tcltk
VignetteBuilder: knitr
Suggests: knitr, RUnit, testthat, ggplot2
Imports: igraph, Matrix, RANN, RSpectra, VGAM, gplots, parallel, plyr,
        methods, cluster, Biobase, fpc, BiocGenerics, monocle,
        grDevices, graphics, stats, utils
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 5.0.1
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:34:29 UTC
RemoteUrl: https://github.com/bioc/uSORT
RemoteRef: RELEASE_3_22
RemoteSha: a4638f83e967f909b6bff562231667fabff0a494
NeedsCompilation: no
Packaged: 2025-11-11 18:10:57 UTC; root
Built: R 4.5.2; ; 2025-11-11 18:14:44 UTC; windows
