Package: trio
Type: Package
Title: Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
Version: 3.48.0
Date: 2024-12-28
Author: Holger Schwender, Qing Li, Philipp Berger, Christoph Neumann,
        Margaret Taub, Ingo Ruczinski
Maintainer: Holger Schwender <holger.schw@gmx.de>
Depends: R (>= 3.0.1)
Suggests: haplo.stats, mcbiopi, splines, logicFS (>= 1.28.1),
        KernSmooth, VariantAnnotation
Imports: grDevices, graphics, methods, stats, survival, utils,
        siggenes, LogicReg (>= 1.6.1), data.table
Description: Testing SNPs and SNP interactions with a genotypic TDT.
        This package furthermore contains functions for computing
        pairwise values of LD measures and for identifying LD blocks,
        as well as functions for setting up matched case pseudo-control
        genotype data for case-parent trios in order to run trio logic
        regression, for imputing missing genotypes in trios, for
        simulating case-parent trios with disease risk dependent on SNP
        interaction, and for power and sample size calculation in trio
        data.
License: LGPL-2
biocViews: SNP, GeneticVariability, Microarray, Genetics
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:15:58 UTC
RemoteUrl: https://github.com/bioc/trio
RemoteRef: RELEASE_3_22
RemoteSha: 2a3434d3a9184971bc9e3d8259e0434a5bcc9b0e
NeedsCompilation: no
Packaged: 2025-11-15 07:30:34 UTC; root
Built: R 4.5.2; ; 2025-11-15 07:32:36 UTC; windows
