Package: transcriptogramer
Type: Package
Title: Transcriptional analysis based on transcriptograms
Version: 1.32.0
Date: 2019-12-13
Authors@R: c(
    person("Diego", "Morais", email = "vinx@ufrn.edu.br",
    role = c("aut", "cre")),
    person("Rodrigo", "Dalmolin", email = "rodrigo.dalmolin@imd.ufrn.br",
    role = "aut"))
Description: R package for transcriptional analysis based on
        transcriptograms, a method to analyze transcriptomes that
        projects expression values on a set of ordered proteins,
        arranged such that the probability that gene products
        participate in the same metabolic pathway exponentially
        decreases with the increase of the distance between two
        proteins of the ordering. Transcriptograms are, hence, genome
        wide gene expression profiles that provide a global view for
        the cellular metabolism, while indicating gene sets whose
        expressions are altered.
Depends: R (>= 3.4), methods
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
biocViews: Software, Network, Visualization, SystemsBiology,
        GeneExpression, GeneSetEnrichment, GraphAndNetwork, Clustering,
        DifferentialExpression, Microarray, RNASeq, Transcription,
        ImmunoOncology
Imports: biomaRt, data.table, doSNOW, foreach, ggplot2, graphics,
        grDevices, igraph, limma, parallel, progress, RedeR, snow,
        stats, tidyr, topGO
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements: Java Runtime Environment (>= 6)
URL: https://github.com/arthurvinx/transcriptogramer
BugReports: https://github.com/arthurvinx/transcriptogramer/issues
Config/pak/sysreqs: libglpk-dev default-jdk libicu-dev libpng-dev
        libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:42:09 UTC
RemoteUrl: https://github.com/bioc/transcriptogramer
RemoteRef: RELEASE_3_22
RemoteSha: 148c87961051b9cbaecd1b04e710606bb26b34fd
NeedsCompilation: no
Packaged: 2025-11-11 18:12:44 UTC; root
Author: Diego Morais [aut, cre],
  Rodrigo Dalmolin [aut]
Maintainer: Diego Morais <vinx@ufrn.edu.br>
Built: R 4.5.2; ; 2025-11-11 18:18:00 UTC; windows
