Package: simplifyEnrichment
Type: Package
Title: Simplify Functional Enrichment Results
Version: 2.4.0
Date: 2024-09-13
Authors@R: person("Zuguang", "Gu", email = "z.gu@dkfz.de", role = c("aut", "cre"),
                  comment = c('ORCID'="0000-0002-7395-8709"))
Depends: R (>= 4.1.0)
Imports: simona, ComplexHeatmap (>= 2.7.4), grid, circlize, GetoptLong,
        digest, tm, GO.db, AnnotationDbi, slam, methods, clue,
        grDevices, stats, utils, cluster (>= 1.14.2), colorspace,
        GlobalOptions (>= 0.1.0)
Suggests: knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
        igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
        flexclust, BiocManager, InteractiveComplexHeatmap (>= 0.99.11),
        shiny, shinydashboard, cola, hu6800.db, rmarkdown, genefilter,
        gridtext, fpc
Description: A new clustering algorithm, "binary cut", for clustering
        similarity matrices of functional terms is implemeted in this
        package. It also provides functions for visualizing,
        summarizing and comparing the clusterings.
biocViews: Software, Visualization, GO, Clustering, GeneSetEnrichment
URL: https://github.com/jokergoo/simplifyEnrichment,
        https://simplifyEnrichment.github.io
VignetteBuilder: knitr
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Config/pak/sysreqs: libglpk-dev make libpng-dev libxml2-dev libssl-dev
        perl zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:59:50 UTC
RemoteUrl: https://github.com/bioc/simplifyEnrichment
RemoteRef: RELEASE_3_22
RemoteSha: 366f2dfe1a28c34602cacc8fc0c1f60446ed83a4
NeedsCompilation: no
Packaged: 2025-11-11 17:39:55 UTC; root
Author: Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Built: R 4.5.2; ; 2025-11-11 17:43:58 UTC; windows
