Package: seqCAT
Title: High Throughput Sequencing Cell Authentication Toolkit
Version: 1.32.0
Authors@R: person("Erik", "Fasterius", email = "erik.fasterius@outlook.com",
    role = c("aut", "cre"))
Description: The seqCAT package uses variant calling data (in the form
        of VCF files) from high throughput sequencing technologies to
        authenticate and validate the source, function and
        characteristics of biological samples used in scientific
        endeavours.
Depends: R (>= 3.6), GenomicRanges (>= 1.26.4), VariantAnnotation(>=
        1.20.3)
Imports: dplyr (>= 0.5.0), GenomeInfoDb (>= 1.13.4), ggplot2 (>=
        2.2.1), grid (>= 3.5.0), IRanges (>= 2.8.2), methods,
        rtracklayer, rlang, scales (>= 0.4.1), S4Vectors (>= 0.12.2),
        stats, SummarizedExperiment (>= 1.4.0), tidyr (>= 0.6.1), utils
Suggests: knitr, BiocStyle, rmarkdown, testthat, BiocManager
biocViews: Coverage, GenomicVariation, Sequencing, VariantAnnotation
License: MIT + file LICENCE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:40:54 UTC
RemoteUrl: https://github.com/bioc/seqCAT
RemoteRef: RELEASE_3_22
RemoteSha: ccf04acaab4de918c8fc169b7e8d8a64feba0565
NeedsCompilation: no
Packaged: 2025-11-11 17:39:57 UTC; root
Author: Erik Fasterius [aut, cre]
Maintainer: Erik Fasterius <erik.fasterius@outlook.com>
Built: R 4.5.2; ; 2025-11-11 17:46:17 UTC; windows
