Package: scHOT
Type: Package
Title: single-cell higher order testing
Version: 1.22.0
Authors@R: c(
    person("Shila", "Ghazanfar", email = "shazanfar@gmail.com", role = c("aut", "cre")
    ),
    person("Yingxin", "Lin", email = "yingxin.lin@sydney.edu.au", role = c("aut")
    ))
Description: Single cell Higher Order Testing (scHOT) is an R package
        that facilitates testing changes in higher order structure of
        gene expression along either a developmental trajectory or
        across space. scHOT is general and modular in nature, can be
        run in multiple data contexts such as along a continuous
        trajectory, between discrete groups, and over spatial
        orientations; as well as accommodate any higher order
        measurement such as variability or correlation. scHOT
        meaningfully adds to first order effect testing, such as
        differential expression, and provides a framework for
        interrogating higher order interactions from single cell data.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0)
Imports: S4Vectors (>= 0.24.3), SingleCellExperiment, Matrix,
        SummarizedExperiment, IRanges, methods, stats, BiocParallel,
        reshape, ggplot2, igraph, grDevices, ggforce, graphics
RoxygenNote: 7.1.0
Suggests: knitr, markdown, rmarkdown, scater, scattermore, scales,
        matrixStats, deldir
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Sequencing, SingleCell, Software,
        Transcriptomics
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:58:22 UTC
RemoteUrl: https://github.com/bioc/scHOT
RemoteRef: RELEASE_3_22
RemoteSha: a61146b15d529150d501bd7d1e464d48622d0be4
NeedsCompilation: no
Packaged: 2025-11-11 17:20:01 UTC; root
Author: Shila Ghazanfar [aut, cre],
  Yingxin Lin [aut]
Maintainer: Shila Ghazanfar <shazanfar@gmail.com>
Built: R 4.5.2; ; 2025-11-11 17:25:55 UTC; windows
