Package: scDataviz
Type: Package
Title: scDataviz: single cell dataviz and downstream analyses
Version: 1.20.0
Authors@R: c(
    person("Kevin", "Blighe", role=c("aut", "cre"), email="kevin@clinicalbioinformatics.co.uk"))
Description: In the single cell World, which includes flow cytometry,
        mass cytometry, single-cell RNA-seq (scRNA-seq), and others,
        there is a need to improve data visualisation and to bring
        analysis capabilities to researchers even from non-technical
        backgrounds. scDataviz attempts to fit into this space, while
        also catering for advanced users. Additonally, due to the way
        that scDataviz is designed, which is based on
        SingleCellExperiment, it has a 'plug and play' feel, and
        immediately lends itself as flexibile and compatibile with
        studies that go beyond scDataviz. Finally, the graphics in
        scDataviz are generated via the ggplot engine, which means that
        users can 'add on' features to these with ease.
BugReports: https://github.com/kevinblighe/scDataviz/issues
License: GPL-3
Depends: R (>= 4.0), S4Vectors, SingleCellExperiment,
Imports: ggplot2, ggrepel, flowCore, umap, Seurat, reshape2, scales,
        RColorBrewer, corrplot, stats, grDevices, graphics, utils,
        MASS, matrixStats, methods
Suggests: PCAtools, cowplot, BiocGenerics, RUnit, knitr, kableExtra,
        rmarkdown
URL: https://github.com/kevinblighe/scDataviz
biocViews: SingleCell, ImmunoOncology, RNASeq, GeneExpression,
        Transcription, FlowCytometry, MassSpectrometry, DataImport
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.1.2
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:00:46 UTC
RemoteUrl: https://github.com/bioc/scDataviz
RemoteRef: RELEASE_3_22
RemoteSha: 6f0efdb33c698a1db93ac815f85c63fed4c05151
NeedsCompilation: no
Packaged: 2025-11-12 03:12:18 UTC; root
Author: Kevin Blighe [aut, cre]
Maintainer: Kevin Blighe <kevin@clinicalbioinformatics.co.uk>
Built: R 4.5.2; ; 2025-11-12 03:25:00 UTC; windows
