Package: roastgsa
Type: Package
Version: 1.8.0
Date: 2023-06-13
Title: Rotation based gene set analysis
Authors@R: person("Adria", "Caballe", email = "adria.caballe@irbbarcelona.org",role = c("aut", "cre"), comment = c(ORCID = "0000-0002-2388-4713"))
BugReports: https://github.com/adricaba/roastgsa/issues
Description: This package implements a variety of functions useful for
        gene set analysis using rotations to approximate the null
        distribution. It contributes with the implementation of seven
        test statistic scores that can be used with different goals and
        interpretations. Several functions are available to complement
        the statistical results with graphical representations.
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: Microarray, Preprocessing, Normalization, GeneExpression,
        Survival, Transcription, Sequencing, Transcriptomics, Bayesian,
        Clustering, Regression, RNASeq, MicroRNAArray, mRNAMicroarray,
        FunctionalGenomics, SystemsBiology, ImmunoOncology,
        DifferentialExpression, GeneSetEnrichment, BatchEffect,
        MultipleComparison, QualityControl, TimeCourse, Metabolomics,
        Proteomics, Epigenetics, Cheminformatics, ExonArray,
        OneChannel, TwoChannel, ProprietaryPlatforms, CellBiology,
        BiomedicalInformatics, AlternativeSplicing,
        DifferentialSplicing, DataImport, Pathways
Depends: R (>= 4.3.0)
Imports: parallel, grDevices, graphics, utils, stats, methods, grid,
        RColorBrewer, gplots, ggplot2, limma, Biobase
Suggests: BiocStyle, knitr, rmarkdown, GSEABenchmarkeR,
        EnrichmentBrowser, preprocessCore, DESeq2
License: GPL-3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:24:38 UTC
RemoteUrl: https://github.com/bioc/roastgsa
RemoteRef: RELEASE_3_22
RemoteSha: fee309a496aef9a26ea5f0653a94ea42c9c08d21
NeedsCompilation: no
Packaged: 2025-11-11 17:08:48 UTC; root
Author: Adria Caballe [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2388-4713>)
Maintainer: Adria Caballe <adria.caballe@irbbarcelona.org>
Built: R 4.5.2; ; 2025-11-11 17:14:33 UTC; windows
