Package: rgsepd
Type: Package
Title: Gene Set Enrichment / Projection Displays
Version: 1.42.0
Date: 2022-03-22
Author: Karl Stamm
Maintainer: Karl Stamm <karl.stamm@gmail.com>
Description: R/GSEPD is a bioinformatics package for R to help
        disambiguate transcriptome samples (a matrix of RNA-Seq counts
        at transcript IDs) by automating differential expression (with
        DESeq2), then gene set enrichment (with GOSeq), and finally a
        N-dimensional projection to quantify in which ways each sample
        is like either treatment group.
Depends: R (>= 4.2.0), DESeq2, goseq (>= 1.28)
Imports: gplots, biomaRt, org.Hs.eg.db, GO.db, SummarizedExperiment,
        AnnotationDbi
Suggests: boot, tools, BiocGenerics, knitr, xtable
License: GPL-3
biocViews: ImmunoOncology, Software, DifferentialExpression,
        GeneSetEnrichment, RNASeq
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:23:22 UTC
RemoteUrl: https://github.com/bioc/rgsepd
RemoteRef: RELEASE_3_22
RemoteSha: c033fd6a7f9a2863258753150178259b7d8453ab
NeedsCompilation: no
Packaged: 2025-11-11 17:09:20 UTC; root
Built: R 4.5.2; ; 2025-11-11 17:20:36 UTC; windows
