Package: omicRexposome
Title: Exposome and omic data associatin and integration analysis
Version: 1.32.0
Authors@R: c(person("Carles", "Hernandez-Ferrer", , "carles.hernandez@isglobal.org", c("aut", "cre")),
    person("Juan R.", "González", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Maintainer: Xavier Escribà Montagut <xavier.escriba@isglobal.org>
Description: omicRexposome systematizes the association evaluation
        between exposures and omic data, taking advantage of
        MultiDataSet for coordinated data management, rexposome for
        exposome data definition and limma for association testing.
        Also to perform data integration mixing exposome and omic data
        using multi co-inherent analysis (omicade4) and multi-canonical
        correlation analysis (PMA).
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Depends: R (>= 3.5.0), Biobase
Imports: stats, utils, grDevices, graphics, methods, rexposome, limma,
        sva, ggplot2, ggrepel, PMA, omicade4, gridExtra, MultiDataSet,
        SmartSVA, isva, parallel, SummarizedExperiment, stringr
Suggests: BiocStyle, knitr, rmarkdown, snpStats, brgedata
biocViews: ImmunoOncology, WorkflowStep, MultipleComparison,
        Visualization, GeneExpression, DifferentialExpression,
        DifferentialMethylation, GeneRegulation, Epigenetics,
        Proteomics, Transcriptomics, StatisticalMethod, Regression
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libxml2-dev
        libssl-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:41:13 UTC
RemoteUrl: https://github.com/bioc/omicRexposome
RemoteRef: RELEASE_3_22
RemoteSha: 0868a1b0f11a2681b909d33aae1096fd06735a03
NeedsCompilation: no
Packaged: 2025-11-19 07:36:55 UTC; root
Author: Carles Hernandez-Ferrer [aut, cre],
  Juan R. González [aut]
Built: R 4.5.2; ; 2025-11-19 07:40:53 UTC; windows
