# Open Cancer TherApeutic Discovery (OCTAD)

## Documentation for package ‘octad’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

computeCellLine | Compute Correlation between cell lines and vector of case ids.
computeRefTissue | Compute correlating reference control samples.
diffExp | Compute differential expression
loadOctadCounts | Load octad expression data
octad | Open Cancer TherApeutic Discovery (OCTAD) database package
octadDrugEnrichment | Compute Drug enrichment
res_example | Differential expression example for HCC vs adjacent liver tissue computed in diffExp() function
runsRGES | Compute sRGES
sRGES_example | Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset
topLineEval | Evaluate cell lines