# multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

## Documentation for package ‘multiClust’ version 1.40.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

avg_probe_exp | Function to produce a matrix containing the average expression of each gene probe within each sample cluster.
cluster_analysis | Function to perform Kmeans or Hierarchical clustering analysis of the selected gene probe expression data.
input_file | Function to read-in the gene expression file and assign gene probe names as the rownames.
nor.min.max | Function to normalize data to bring values into alignment. This function uses feature scaling to normalize values in a dataset between 0 and 1.
number_clusters | Function to determine the number of clusters to be used to cluster gene probes and samples.
number_probes | Function to determine the number of gene probes to select for in the gene feature selection process.
probe_ranking | Function to select for genes using one of the available gene probe ranking options.
surv_analysis | Function to produce Kaplan-Meier Survival Plots of selected gene expression data.
WriteMatrixToFile | Function to write a data matrix to a text file.