Package: methylInheritance
Version: 1.34.0
Date: 2021-11-21
Title: Permutation-Based Analysis associating Conserved Differentially
        Methylated Elements Across Multiple Generations to a Treatment
        Effect
Description: Permutation analysis, based on Monte Carlo sampling, for
        testing the hypothesis that the number of conserved
        differentially methylated elements, between several
        generations, is associated to an effect inherited from a
        treatment and that stochastic effect can be dismissed.
Authors@R: c(person("Astrid", "Deschênes", email="adeschen@hotmail.com",
        role=c("cre","aut"), comment = c(ORCID = "0000-0001-7846-6749")), 
        person("Pascal", "Belleau", email="pascal_belleau@hotmail.com", 
        role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca", role=c("aut")))
Depends: R (>= 3.5)
Imports: methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors,
        methods, parallel, ggplot2, gridExtra, rebus
Suggests: BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit,
        methInheritSim, testthat (>= 3.0.0)
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/adeschen/methylInheritance
BugReports: https://github.com/adeschen/methylInheritance/issues
VignetteBuilder: knitr
biocViews: BiologicalQuestion, Epigenetics, DNAMethylation,
        DifferentialMethylation, MethylSeq, Software, ImmunoOncology,
        StatisticalMethod, WholeGenome, Sequencing
RoxygenNote: 7.3.3
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:38:16 UTC
RemoteUrl: https://github.com/bioc/methylInheritance
RemoteRef: RELEASE_3_22
RemoteSha: 43a28dd3a504d5d5120cc5fa57a58afa7012437e
NeedsCompilation: no
Packaged: 2025-11-11 15:43:12 UTC; root
Author: Astrid Deschênes [cre, aut] (ORCID:
    <https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),
  Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.5.2; ; 2025-11-11 15:52:17 UTC; windows
