Package: mCSEA
Type: Package
Title: Methylated CpGs Set Enrichment Analysis
Version: 1.30.1
Author: Jordi Martorell-Marugán and Pedro Carmona-Sáez
Maintainer: Jordi Martorell-Marugán <jmartorellm@gmail.com>
Description: Identification of diferentially methylated regions (DMRs)
        in predefined regions (promoters, CpG islands...) from the
        human genome using Illumina's 450K or EPIC microarray data.
        Provides methods to rank CpG probes based on linear models and
        includes plotting functions.
Depends: R (>= 3.5), mCSEAdata, Homo.sapiens
Suggests: Biobase, BiocGenerics, BiocStyle, FlowSorted.Blood.450k,
        knitr, leukemiasEset, minfi, minfiData, rmarkdown, RUnit
Imports: biomaRt, fgsea, GenomicFeatures, GenomicRanges, ggplot2,
        graphics, grDevices, Gviz, IRanges, limma, methods, parallel,
        S4Vectors, stats, SummarizedExperiment, utils
VignetteBuilder: knitr
biocViews: ImmunoOncology, DifferentialMethylation, DNAMethylation,
        Epigenetics, Genetics, GenomeAnnotation, MethylationArray,
        Microarray, MultipleComparison, TwoChannel
License: GPL-2
Encoding: UTF-8
LazyData: true
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-11-27 08:58:57 UTC
RemoteUrl: https://github.com/bioc/mCSEA
RemoteRef: RELEASE_3_22
RemoteSha: 165933d6562b0e15dcecd88c3c500e80a5b572a5
NeedsCompilation: no
Packaged: 2025-11-28 08:16:41 UTC; root
Built: R 4.5.2; ; 2025-11-28 08:22:57 UTC; windows
