# Make fast and memory efficient BED file queries, summaries and matrices

## Documentation for package ‘iscream’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

get_df_string | DataFrame to region strings
get_granges_string | GRanges to region strings
get_log_level | Set and get logging level
get_threads | Get the number of available threads
htslib_version | Get htslib version and available features
make_mat | Make a matrix from a numeric column of BED files
make_mat_bsseq | Make M/beta and coverage matrices from WGBS BED files
make_mat_gr | Make a matrix from a numeric column of BED files
make_mat_se | Make a matrix from a numeric column of BED files
query_chroms | Query the chromosomes or seqnames from a vector of BED files
set_log_level | Set and get logging level
set_threads | Set the number of available threads
summarize_meth_regions | Summarize methylation information over genomic regions
summarize_regions | Summarize information over genomic regions from any BED file
tabix | Query records from tabixed BED files
tabix_gr | Query records from tabixed BED files
tabix_raw | Query records from tabixed BED files