Package: geneplast
Type: Package
Title: Evolutionary and plasticity analysis of orthologous groups
Version: 1.36.0
Author: Rodrigo Dalmolin, Mauro Castro
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Depends: R (>= 4.0), methods
Imports: igraph, snow, ape, grDevices, graphics, stats, utils,
        data.table
Suggests: RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown,
        Fletcher2013b, geneplast.data, geneplast.data.string.v91,
        ggplot2, ggpubr, plyr
Description: Geneplast is designed for evolutionary and plasticity
        analysis based on orthologous groups distribution in a given
        species tree. It uses Shannon information theory and orthologs
        abundance to estimate the Evolutionary Plasticity Index.
        Additionally, it implements the Bridge algorithm to determine
        the evolutionary root of a given gene based on its orthologs
        distribution.
License: GPL (>= 2)
biocViews: Genetics, GeneRegulation, SystemsBiology
VignetteBuilder: knitr
Collate: AllChecks.R AllClasses.R AllGenerics.R AllMethods.R
        AllContructors.R AllSupplements.R AllPlots.R
LazyLoad: yes
NeedsCompilation: no
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:32:41 UTC
RemoteUrl: https://github.com/bioc/geneplast
RemoteRef: RELEASE_3_22
RemoteSha: 9e89d38620a8da7615ab63319e9b17099ecf7105
Packaged: 2025-11-11 19:10:58 UTC; root
Built: R 4.5.2; ; 2025-11-11 19:14:21 UTC; windows
