Package: funOmics
Title: Aggregating Omics Data into Higher-Level Functional
        Representations
Version: 1.4.0
Authors@R: c(
           person("Elisa", "Gomez de Lope", role = c("aut", "cre"), email = "elisa.gomezdelope@uni.lu",comment=c(ORCID="0000-0002-7115-7393")),
           person("Enrico", "Glaab", role = "ctb", email = "enrico.glaab@uni.lu", comment = c(ORCID="0000-0003-3977-7469")))
Description: The 'funOmics' package ggregates or summarizes omics data
        into higher level functional representations such as GO terms
        gene sets or KEGG metabolic pathways. The aggregated data
        matrix represents functional activity scores that facilitate
        the analysis of functional molecular sets while allowing to
        reduce dimensionality and provide easier and faster biological
        interpretations. Coordinated functional activity scores can be
        as informative as single molecules!
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.1
URL: https://github.com/elisagdelope/funomics
BugReports: https://github.com/elisagdelope/funomics/issues
Depends: R (>= 4.4.0), NMF
Imports: NMF, pathifier, stats, KEGGREST, AnnotationDbi, org.Hs.eg.db,
        dplyr, stringr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), MultiAssayExperiment,
        SummarizedExperiment, airway
VignetteBuilder: knitr
VignetteIndexEntry: funomics_vignette Vignette
biocViews: Software, Transcriptomics, Metabolomics, Proteomics,
        Pathways, GO, KEGG
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:30:40 UTC
RemoteUrl: https://github.com/bioc/funOmics
RemoteRef: RELEASE_3_22
RemoteSha: 534915d78801d9126aac501ffa0094276d48e111
NeedsCompilation: no
Packaged: 2025-11-11 18:53:10 UTC; root
Author: Elisa Gomez de Lope [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7115-7393>),
  Enrico Glaab [ctb] (ORCID: <https://orcid.org/0000-0003-3977-7469>)
Maintainer: Elisa Gomez de Lope <elisa.gomezdelope@uni.lu>
Built: R 4.5.2; ; 2025-11-11 18:59:52 UTC; windows
