Package: epistack
Title: Heatmaps of Stack Profiles from Epigenetic Signals
Version: 1.16.0
Authors@R: c(person("SACI", "Safia", email = "safiasaci1995@gmail.com", role = "aut"),
    person("DEVAILLY", "Guillaume",
        email = "gdevailly@hotmail.com", role = c("cre", "aut")))
Description: The epistack package main objective is the visualizations
        of stacks of genomic tracks (such as, but not restricted to,
        ChIP-seq, ATAC-seq, DNA methyation or genomic conservation
        data) centered at genomic regions of interest. epistack needs
        three different inputs: 1) a genomic score objects, such as
        ChIP-seq coverage or DNA methylation values, provided as a
        `GRanges` (easily obtained from `bigwig` or `bam` files). 2) a
        list of feature of interest, such as peaks or transcription
        start sites, provided as a `GRanges` (easily obtained from
        `gtf` or `bed` files). 3) a score to sort the features, such as
        peak height or gene expression value.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports: GenomicRanges, SummarizedExperiment, BiocGenerics, S4Vectors,
        IRanges, graphics, plotrix, grDevices, stats, methods
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
Depends: R (>= 4.1)
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown,
        EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: RNASeq, Preprocessing, ChIPSeq, GeneExpression, Coverage
URL: https://github.com/GenEpi-GenPhySE/epistack
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:13:05 UTC
RemoteUrl: https://github.com/bioc/epistack
RemoteRef: RELEASE_3_22
RemoteSha: 9ac611d4db1b3d205d963524b34f288776440d07
NeedsCompilation: no
Packaged: 2025-11-11 14:29:16 UTC; root
Author: SACI Safia [aut],
  DEVAILLY Guillaume [cre, aut]
Maintainer: DEVAILLY Guillaume <gdevailly@hotmail.com>
Built: R 4.5.2; ; 2025-11-11 14:34:47 UTC; windows
