# Generated by roxygen2: do not edit by hand

export(annotate_epimutations)
export(epi_parameters)
export(epi_preprocess)
export(epimutations)
export(epimutations_one_leave_out)
export(norm_parameters)
export(plot_epimutations)
import(IlluminaHumanMethylation450kanno.ilmn12.hg19)
import(IlluminaHumanMethylation450kmanifest)
import(IlluminaHumanMethylationEPICanno.ilm10b2.hg19)
import(IlluminaHumanMethylationEPICmanifest)
import(ensembldb)
import(epimutacionsData)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,width)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(ExperimentHub,ExperimentHub)
importFrom(GenomicFeatures,genes)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,granges)
importFrom(GenomicRanges,makeGRangesFromDataFrame)
importFrom(GenomicRanges,mcols)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,from)
importFrom(S4Vectors,to)
importFrom(S4Vectors,values)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useDataset)
importFrom(biomaRt,useEnsembl)
importFrom(bumphunter,bumphunter)
importFrom(bumphunter,clusterMaker)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_ribbon)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,lims)
importFrom(ggplot2,scale_colour_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggrepel,geom_text_repel)
importFrom(isotree,isolation.forest)
importFrom(matrixStats,colVars)
importFrom(matrixStats,rowQuantiles)
importFrom(minfi,annotation)
importFrom(minfi,combineArrays)
importFrom(minfi,getAnnotation)
importFrom(minfi,getBeta)
importFrom(minfi,mapToGenome)
importFrom(minfi,preprocessFunnorm)
importFrom(minfi,preprocessIllumina)
importFrom(minfi,preprocessNoob)
importFrom(minfi,preprocessQuantile)
importFrom(minfi,preprocessRaw)
importFrom(minfi,preprocessSWAN)
importFrom(minfi,ratioConvert)
importFrom(minfi,read.metharray.exp)
importFrom(minfi,read.metharray.sheet)
importFrom(robustbase,covMcd)
importFrom(stats,.getXlevels)
importFrom(stats,lm.fit)
importFrom(stats,manova)
importFrom(stats,model.frame)
importFrom(stats,model.matrix)
importFrom(stats,model.response)
importFrom(stats,p.adjust)
importFrom(stats,pbeta)
importFrom(stats,predict)
importFrom(stats,qchisq)
importFrom(utils,globalVariables)
useDynLib(epimutacions,ruben)
